miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2783 5' -54 NC_001491.2 + 144488 0.66 0.959199
Target:  5'- gCCGgUGGcgGgGuuccGCGGCGGgcGCUCGGa -3'
miRNA:   3'- -GGCgACUuaCgU----UGCCGUC--UGAGCCa -5'
2783 5' -54 NC_001491.2 + 144898 0.66 0.953022
Target:  5'- -gGCUGggUGCcggggacgccggcugGGCGGCAGccGC-CGGg -3'
miRNA:   3'- ggCGACuuACG---------------UUGCCGUC--UGaGCCa -5'
2783 5' -54 NC_001491.2 + 143854 0.66 0.948857
Target:  5'- gCCGUUGAugaugggcggugggcGUGUAGCGGCucuagccuaugGGGCcCGGUc -3'
miRNA:   3'- -GGCGACU---------------UACGUUGCCG-----------UCUGaGCCA- -5'
2783 5' -54 NC_001491.2 + 146650 0.66 0.947125
Target:  5'- cUCGCUGGGguccaguccgGgGACGGCGGACgccccgccgCGGa -3'
miRNA:   3'- -GGCGACUUa---------CgUUGCCGUCUGa--------GCCa -5'
2783 5' -54 NC_001491.2 + 29726 0.67 0.942626
Target:  5'- -aGC-GAGcGCGACGcuauGCAGACUCGGc -3'
miRNA:   3'- ggCGaCUUaCGUUGC----CGUCUGAGCCa -5'
2783 5' -54 NC_001491.2 + 81517 0.67 0.937885
Target:  5'- gCGCUgGGAUGCccacggguuAACGGUGGcgcgGCUCGGg -3'
miRNA:   3'- gGCGA-CUUACG---------UUGCCGUC----UGAGCCa -5'
2783 5' -54 NC_001491.2 + 7314 0.67 0.932901
Target:  5'- gUGCgGAcGUGC-ACGGCAGACUCu-- -3'
miRNA:   3'- gGCGaCU-UACGuUGCCGUCUGAGcca -5'
2783 5' -54 NC_001491.2 + 104091 0.67 0.932389
Target:  5'- gCCGCUGAAgaGCAgggucgacaaaaaGCGGUAGGCguacuccaCGGa -3'
miRNA:   3'- -GGCGACUUa-CGU-------------UGCCGUCUGa-------GCCa -5'
2783 5' -54 NC_001491.2 + 146394 0.68 0.910516
Target:  5'- gCCGCg----GCAGCGGCGGcCUgGGc -3'
miRNA:   3'- -GGCGacuuaCGUUGCCGUCuGAgCCa -5'
2783 5' -54 NC_001491.2 + 102986 0.68 0.910516
Target:  5'- cCCGCUuu-UGCAGCuccucgauaggaGGCGGGCUCGa- -3'
miRNA:   3'- -GGCGAcuuACGUUG------------CCGUCUGAGCca -5'
2783 5' -54 NC_001491.2 + 100965 0.68 0.906822
Target:  5'- aCUGCUGcgcgucucccagGCGGCGGCAGACg-GGa -3'
miRNA:   3'- -GGCGACuua---------CGUUGCCGUCUGagCCa -5'
2783 5' -54 NC_001491.2 + 96340 0.68 0.904311
Target:  5'- gCCGCUGGAgGCGcaGGCAGGCgcccaGGa -3'
miRNA:   3'- -GGCGACUUaCGUugCCGUCUGag---CCa -5'
2783 5' -54 NC_001491.2 + 138276 0.68 0.891185
Target:  5'- cUCGCUGggUGCGACGGggaAGuagccCUgGGg -3'
miRNA:   3'- -GGCGACuuACGUUGCCg--UCu----GAgCCa -5'
2783 5' -54 NC_001491.2 + 148788 0.69 0.862171
Target:  5'- cCCGCgGGGcuCGGCGGCGGGgagcCUCGGUg -3'
miRNA:   3'- -GGCGaCUUacGUUGCCGUCU----GAGCCA- -5'
2783 5' -54 NC_001491.2 + 39942 0.69 0.846365
Target:  5'- aCCGCaUGc--GCAACGGCcaGCUCGGa -3'
miRNA:   3'- -GGCG-ACuuaCGUUGCCGucUGAGCCa -5'
2783 5' -54 NC_001491.2 + 40244 0.72 0.696853
Target:  5'- cCCGCUcGGcgGCAguggcgGCGGCAGuaacCUCGGa -3'
miRNA:   3'- -GGCGA-CUuaCGU------UGCCGUCu---GAGCCa -5'
2783 5' -54 NC_001491.2 + 125595 0.73 0.645388
Target:  5'- gCCGCUGcc-GCGGCGGCGGcCgUCGGa -3'
miRNA:   3'- -GGCGACuuaCGUUGCCGUCuG-AGCCa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.