miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2786 3' -50.8 NC_001491.2 + 43995 0.66 0.992952
Target:  5'- uUUGUCGgAGcCGCUacUCGGAGaACUGGGg -3'
miRNA:   3'- -AGCGGCgUC-GCGA--AGUUUUaUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 137194 0.66 0.992952
Target:  5'- -gGCUGCuGCGCUagCAAAAaucgugucUGCUGGu -3'
miRNA:   3'- agCGGCGuCGCGAa-GUUUU--------AUGACCu -5'
2786 3' -50.8 NC_001491.2 + 83653 0.66 0.992642
Target:  5'- aCGCUGCAGuCGCcaucgcaacaaacaUUCA----GCUGGAg -3'
miRNA:   3'- aGCGGCGUC-GCG--------------AAGUuuuaUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 43149 0.66 0.992322
Target:  5'- -gGCUGCAGCGCUUCccacagcgacgccAAUGCguucggugGGAu -3'
miRNA:   3'- agCGGCGUCGCGAAGuu-----------UUAUGa-------CCU- -5'
2786 3' -50.8 NC_001491.2 + 13721 0.66 0.989337
Target:  5'- -aGCUGCcgGGCGCgcgUCAAAAUACcagccGGGu -3'
miRNA:   3'- agCGGCG--UCGCGa--AGUUUUAUGa----CCU- -5'
2786 3' -50.8 NC_001491.2 + 6548 0.66 0.987855
Target:  5'- gCGCCGCccuGGCGCUcaucggacUCGAGGUG--GGAa -3'
miRNA:   3'- aGCGGCG---UCGCGA--------AGUUUUAUgaCCU- -5'
2786 3' -50.8 NC_001491.2 + 44578 0.66 0.987855
Target:  5'- gCGCCGCuGGCGgcCUUUGAAGUggAUUGGGg -3'
miRNA:   3'- aGCGGCG-UCGC--GAAGUUUUA--UGACCU- -5'
2786 3' -50.8 NC_001491.2 + 61204 0.66 0.987855
Target:  5'- aUGCCGUguuuGGCgGCUgcgCAAAGUugUGGc -3'
miRNA:   3'- aGCGGCG----UCG-CGAa--GUUUUAugACCu -5'
2786 3' -50.8 NC_001491.2 + 20661 0.67 0.986218
Target:  5'- cCGCCa-AGCGCUUCGu----CUGGAc -3'
miRNA:   3'- aGCGGcgUCGCGAAGUuuuauGACCU- -5'
2786 3' -50.8 NC_001491.2 + 75065 0.67 0.986218
Target:  5'- cCGUCaacgGCAGCGgUUCGGAAguagucgaACUGGAg -3'
miRNA:   3'- aGCGG----CGUCGCgAAGUUUUa-------UGACCU- -5'
2786 3' -50.8 NC_001491.2 + 123018 0.67 0.982442
Target:  5'- gCGCCGCGGUGUcc----GUGCUGGu -3'
miRNA:   3'- aGCGGCGUCGCGaaguuuUAUGACCu -5'
2786 3' -50.8 NC_001491.2 + 60885 0.67 0.982442
Target:  5'- gCGCaCGCAGCGCccCAA---ACUGGc -3'
miRNA:   3'- aGCG-GCGUCGCGaaGUUuuaUGACCu -5'
2786 3' -50.8 NC_001491.2 + 147172 0.67 0.980284
Target:  5'- -aGCCcCGGCGCcUCcgccgcucugGGAGUGCUGGGg -3'
miRNA:   3'- agCGGcGUCGCGaAG----------UUUUAUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 123500 0.67 0.977935
Target:  5'- aCGCCGCGGCGgCUgCGug--GCgggGGAa -3'
miRNA:   3'- aGCGGCGUCGC-GAaGUuuuaUGa--CCU- -5'
2786 3' -50.8 NC_001491.2 + 67062 0.68 0.975386
Target:  5'- gUCGCgGCAGCGCUUCccccgGCa--- -3'
miRNA:   3'- -AGCGgCGUCGCGAAGuuuuaUGaccu -5'
2786 3' -50.8 NC_001491.2 + 50331 0.68 0.972628
Target:  5'- aCGCCGCAGUcgccggcgagcgGCUcgcuauuugcgUCAGAaagggccgacaGUACUGGGg -3'
miRNA:   3'- aGCGGCGUCG------------CGA-----------AGUUU-----------UAUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 79149 0.68 0.972628
Target:  5'- gUCcCCGCGGCGCUgUCAAAGgauaGCUGu- -3'
miRNA:   3'- -AGcGGCGUCGCGA-AGUUUUa---UGACcu -5'
2786 3' -50.8 NC_001491.2 + 139792 0.68 0.963027
Target:  5'- aCGCCGcCGGCGgacgCAGAGcgcUACUGGGc -3'
miRNA:   3'- aGCGGC-GUCGCgaa-GUUUU---AUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 61495 0.69 0.949564
Target:  5'- cCGCucaCGCAGCGCUgugcgccGCUGGAg -3'
miRNA:   3'- aGCG---GCGUCGCGAaguuuuaUGACCU- -5'
2786 3' -50.8 NC_001491.2 + 97642 0.7 0.926682
Target:  5'- -aGCCGCGcuCGCUUCAAugcccGCUGGGu -3'
miRNA:   3'- agCGGCGUc-GCGAAGUUuua--UGACCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.