Results 1 - 20 of 28 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2786 | 5' | -53.1 | NC_001491.2 | + | 83268 | 0.66 | 0.963383 |
Target: 5'- uUGUCCAGCcUCCcGCCAAccaGCGaUGCGu -3' miRNA: 3'- -ACGGGUCGuGGGaUGGUU---UGUaACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 106201 | 0.66 | 0.963383 |
Target: 5'- cGCUCGGgGCCCUgGCCAuggcAGCAcaGCGa -3' miRNA: 3'- aCGGGUCgUGGGA-UGGU----UUGUaaCGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 123465 | 0.66 | 0.963383 |
Target: 5'- gGCUCGGCGCCC-GCCAuguugaguAGCGcgGCc -3' miRNA: 3'- aCGGGUCGUGGGaUGGU--------UUGUaaCGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 68761 | 0.66 | 0.963032 |
Target: 5'- aUGCCCuGGCgGCCCUcgaagauGCCGcGCG-UGCAg -3' miRNA: 3'- -ACGGG-UCG-UGGGA-------UGGUuUGUaACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 118312 | 0.66 | 0.959761 |
Target: 5'- -cCCCGGCACCCaGCCcGGCuccggGCu -3' miRNA: 3'- acGGGUCGUGGGaUGGuUUGuaa--CGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 59495 | 0.66 | 0.959386 |
Target: 5'- cGUUUAGUuuuagcgACCCUACCAGAgGUaGCAg -3' miRNA: 3'- aCGGGUCG-------UGGGAUGGUUUgUAaCGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 112949 | 0.66 | 0.955899 |
Target: 5'- gGCCCGugACCCUugACCAGAUAUgGCc -3' miRNA: 3'- aCGGGUcgUGGGA--UGGUUUGUAaCGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 105502 | 0.66 | 0.955899 |
Target: 5'- -uCCCAGCuuauaguaaggACCCcGCCGGACAUgcuacGCAa -3' miRNA: 3'- acGGGUCG-----------UGGGaUGGUUUGUAa----CGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 110865 | 0.66 | 0.951793 |
Target: 5'- gGCCCAugcggccuagauGCAgCCUGCgGGAguUUGCGc -3' miRNA: 3'- aCGGGU------------CGUgGGAUGgUUUguAACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 51536 | 0.66 | 0.947438 |
Target: 5'- --aCCAGCACgaaagcagUCUGCCAGACGUgUGCu -3' miRNA: 3'- acgGGUCGUG--------GGAUGGUUUGUA-ACGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 65741 | 0.67 | 0.942831 |
Target: 5'- aGCCgGGCGCCCguccACCAc-CAUcGCGg -3' miRNA: 3'- aCGGgUCGUGGGa---UGGUuuGUAaCGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 41381 | 0.67 | 0.937968 |
Target: 5'- uUGUCCAGCGCggCUGCCAcACuUUGUg -3' miRNA: 3'- -ACGGGUCGUGg-GAUGGUuUGuAACGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 146893 | 0.67 | 0.932849 |
Target: 5'- gGCCCGG-GCCCggGCCcccucGGCGUUGUAg -3' miRNA: 3'- aCGGGUCgUGGGa-UGGu----UUGUAACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 123115 | 0.67 | 0.921836 |
Target: 5'- gGCCCGGCGCCgCU-CCGGagcGCGUccgcUGCc -3' miRNA: 3'- aCGGGUCGUGG-GAuGGUU---UGUA----ACGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 116994 | 0.67 | 0.921836 |
Target: 5'- cGCUCuGgGCCCUGCCAcACGcgGCc -3' miRNA: 3'- aCGGGuCgUGGGAUGGUuUGUaaCGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 98316 | 0.67 | 0.921258 |
Target: 5'- cGCCCAGCcCCCcaaucauccucggUACCAAGCugaagccugUGUAc -3' miRNA: 3'- aCGGGUCGuGGG-------------AUGGUUUGua-------ACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 76008 | 0.68 | 0.903382 |
Target: 5'- gGCCCagGGCGCCCagGCCuuuggcagAGACAUcUGCGg -3' miRNA: 3'- aCGGG--UCGUGGGa-UGG--------UUUGUA-ACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 78192 | 0.68 | 0.882659 |
Target: 5'- gGCCCAGgGCCuCUGCCGcgauAGCAaagGCc -3' miRNA: 3'- aCGGGUCgUGG-GAUGGU----UUGUaa-CGu -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 111282 | 0.69 | 0.862945 |
Target: 5'- cUGCUCAgGCACCCcGCCAAgaagacuccagaccaGCAcgUGCAc -3' miRNA: 3'- -ACGGGU-CGUGGGaUGGUU---------------UGUa-ACGU- -5' |
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2786 | 5' | -53.1 | NC_001491.2 | + | 116911 | 0.69 | 0.859774 |
Target: 5'- aGCCUccGGCGCgCCUACgCGGACAUgGCc -3' miRNA: 3'- aCGGG--UCGUG-GGAUG-GUUUGUAaCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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