miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2786 5' -53.1 NC_001491.2 + 110587 0.78 0.387247
Target:  5'- gUGCCCccGGUGCCCUAcCCAGACAUaGCGu -3'
miRNA:   3'- -ACGGG--UCGUGGGAU-GGUUUGUAaCGU- -5'
2786 5' -53.1 NC_001491.2 + 85420 0.77 0.448209
Target:  5'- gUGCCCcgcgGGCACCCUgucggaggccggacGCCAcGCAUUGCc -3'
miRNA:   3'- -ACGGG----UCGUGGGA--------------UGGUuUGUAACGu -5'
2786 5' -53.1 NC_001491.2 + 81405 0.74 0.614394
Target:  5'- gGCCCGGCGCuCCUuCCucuGGgGUUGCAu -3'
miRNA:   3'- aCGGGUCGUG-GGAuGGu--UUgUAACGU- -5'
2786 5' -53.1 NC_001491.2 + 85347 0.74 0.625033
Target:  5'- uUGCUgAGCACCCUaACCGGguuGCGUuuUGCAa -3'
miRNA:   3'- -ACGGgUCGUGGGA-UGGUU---UGUA--ACGU- -5'
2786 5' -53.1 NC_001491.2 + 141809 0.7 0.808215
Target:  5'- gGCCCAGCcauGCCCca-CGGACAgccgUGCGg -3'
miRNA:   3'- aCGGGUCG---UGGGaugGUUUGUa---ACGU- -5'
2786 5' -53.1 NC_001491.2 + 59416 0.69 0.851692
Target:  5'- gGCCU-GCACCg-ACCAAAgAUUGCGa -3'
miRNA:   3'- aCGGGuCGUGGgaUGGUUUgUAACGU- -5'
2786 5' -53.1 NC_001491.2 + 28903 0.69 0.851692
Target:  5'- aUGCCCcgauaucgAGCACCUgcgcucGCUcAGCGUUGCAa -3'
miRNA:   3'- -ACGGG--------UCGUGGGa-----UGGuUUGUAACGU- -5'
2786 5' -53.1 NC_001491.2 + 141582 0.69 0.852511
Target:  5'- gGCCCuGCGCCCguaccuggcccggggGCCAGggGCGUucUGCGc -3'
miRNA:   3'- aCGGGuCGUGGGa--------------UGGUU--UGUA--ACGU- -5'
2786 5' -53.1 NC_001491.2 + 116911 0.69 0.859774
Target:  5'- aGCCUccGGCGCgCCUACgCGGACAUgGCc -3'
miRNA:   3'- aCGGG--UCGUG-GGAUG-GUUUGUAaCGu -5'
2786 5' -53.1 NC_001491.2 + 111282 0.69 0.862945
Target:  5'- cUGCUCAgGCACCCcGCCAAgaagacuccagaccaGCAcgUGCAc -3'
miRNA:   3'- -ACGGGU-CGUGGGaUGGUU---------------UGUa-ACGU- -5'
2786 5' -53.1 NC_001491.2 + 78192 0.68 0.882659
Target:  5'- gGCCCAGgGCCuCUGCCGcgauAGCAaagGCc -3'
miRNA:   3'- aCGGGUCgUGG-GAUGGU----UUGUaa-CGu -5'
2786 5' -53.1 NC_001491.2 + 76008 0.68 0.903382
Target:  5'- gGCCCagGGCGCCCagGCCuuuggcagAGACAUcUGCGg -3'
miRNA:   3'- aCGGG--UCGUGGGa-UGG--------UUUGUA-ACGU- -5'
2786 5' -53.1 NC_001491.2 + 98316 0.67 0.921258
Target:  5'- cGCCCAGCcCCCcaaucauccucggUACCAAGCugaagccugUGUAc -3'
miRNA:   3'- aCGGGUCGuGGG-------------AUGGUUUGua-------ACGU- -5'
2786 5' -53.1 NC_001491.2 + 116994 0.67 0.921836
Target:  5'- cGCUCuGgGCCCUGCCAcACGcgGCc -3'
miRNA:   3'- aCGGGuCgUGGGAUGGUuUGUaaCGu -5'
2786 5' -53.1 NC_001491.2 + 123115 0.67 0.921836
Target:  5'- gGCCCGGCGCCgCU-CCGGagcGCGUccgcUGCc -3'
miRNA:   3'- aCGGGUCGUGG-GAuGGUU---UGUA----ACGu -5'
2786 5' -53.1 NC_001491.2 + 146893 0.67 0.932849
Target:  5'- gGCCCGG-GCCCggGCCcccucGGCGUUGUAg -3'
miRNA:   3'- aCGGGUCgUGGGa-UGGu----UUGUAACGU- -5'
2786 5' -53.1 NC_001491.2 + 41381 0.67 0.937968
Target:  5'- uUGUCCAGCGCggCUGCCAcACuUUGUg -3'
miRNA:   3'- -ACGGGUCGUGg-GAUGGUuUGuAACGu -5'
2786 5' -53.1 NC_001491.2 + 65741 0.67 0.942831
Target:  5'- aGCCgGGCGCCCguccACCAc-CAUcGCGg -3'
miRNA:   3'- aCGGgUCGUGGGa---UGGUuuGUAaCGU- -5'
2786 5' -53.1 NC_001491.2 + 51536 0.66 0.947438
Target:  5'- --aCCAGCACgaaagcagUCUGCCAGACGUgUGCu -3'
miRNA:   3'- acgGGUCGUG--------GGAUGGUUUGUA-ACGu -5'
2786 5' -53.1 NC_001491.2 + 110865 0.66 0.951793
Target:  5'- gGCCCAugcggccuagauGCAgCCUGCgGGAguUUGCGc -3'
miRNA:   3'- aCGGGU------------CGUgGGAUGgUUUguAACGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.