miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2788 3' -60.6 NC_001491.2 + 125484 0.66 0.722362
Target:  5'- -cCGGGgacCCGCGGgcgcccGCCGCCCGcCGGg- -3'
miRNA:   3'- gaGCCC---GGCGUCa-----UGGUGGGC-GUCac -5'
2788 3' -60.6 NC_001491.2 + 147747 0.66 0.722362
Target:  5'- -cCGGGCCGgGGgGCCGCUgcaGCGGg- -3'
miRNA:   3'- gaGCCCGGCgUCaUGGUGGg--CGUCac -5'
2788 3' -60.6 NC_001491.2 + 114638 0.66 0.702983
Target:  5'- --aGGGCgccgCGCAGaGCCACCgCGCGGc- -3'
miRNA:   3'- gagCCCG----GCGUCaUGGUGG-GCGUCac -5'
2788 3' -60.6 NC_001491.2 + 140099 0.67 0.653692
Target:  5'- -cCGGaGCgGCGccggGCCGCCCGCGGa- -3'
miRNA:   3'- gaGCC-CGgCGUca--UGGUGGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 118871 0.67 0.633806
Target:  5'- -aCGGGgCGUGGuUACCACCCaaGCGGg- -3'
miRNA:   3'- gaGCCCgGCGUC-AUGGUGGG--CGUCac -5'
2788 3' -60.6 NC_001491.2 + 115977 0.68 0.603986
Target:  5'- --gGGGCaGCAGcACCAgCCGCAGa- -3'
miRNA:   3'- gagCCCGgCGUCaUGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 118234 0.68 0.594077
Target:  5'- -cCGGGCCaCGGgcuccucAUCACCCGgCGGUGg -3'
miRNA:   3'- gaGCCCGGcGUCa------UGGUGGGC-GUCAC- -5'
2788 3' -60.6 NC_001491.2 + 148934 0.68 0.594077
Target:  5'- gCUCGGGCCGgGGUgcucaACCACCaGCu--- -3'
miRNA:   3'- -GAGCCCGGCgUCA-----UGGUGGgCGucac -5'
2788 3' -60.6 NC_001491.2 + 145063 0.69 0.516249
Target:  5'- aCUCGGGCUGCGGggACC-CCgGgCAGg- -3'
miRNA:   3'- -GAGCCCGGCGUCa-UGGuGGgC-GUCac -5'
2788 3' -60.6 NC_001491.2 + 45127 0.69 0.506785
Target:  5'- --gGGGCCGCGGcggggGCCG-CCGCAGa- -3'
miRNA:   3'- gagCCCGGCGUCa----UGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 45160 0.69 0.506785
Target:  5'- --gGGGCCGCGGcggggGCCG-CCGCAGa- -3'
miRNA:   3'- gagCCCGGCGUCa----UGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 45193 0.69 0.506785
Target:  5'- --gGGGCCGCGGcggggGCCG-CCGCAGa- -3'
miRNA:   3'- gagCCCGGCGUCa----UGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 45226 0.69 0.506785
Target:  5'- --gGGGCCGCGGcggggGCCG-CCGCAGa- -3'
miRNA:   3'- gagCCCGGCGUCa----UGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 45259 0.69 0.506785
Target:  5'- --gGGGCCGCGGcggggGCCG-CCGCAGa- -3'
miRNA:   3'- gagCCCGGCGUCa----UGGUgGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 137740 0.7 0.469715
Target:  5'- -gCGGGCgGCGGg--CGCCCGCGGg- -3'
miRNA:   3'- gaGCCCGgCGUCaugGUGGGCGUCac -5'
2788 3' -60.6 NC_001491.2 + 148727 0.75 0.245588
Target:  5'- gUCGGGCUccaGCAGcGCCACCCgGCAGa- -3'
miRNA:   3'- gAGCCCGG---CGUCaUGGUGGG-CGUCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.