Results 21 - 25 of 25 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2788 | 5' | -53.8 | NC_001491.2 | + | 69720 | 0.73 | 0.603225 |
Target: 5'- gGGUuCUGACGCCAAGGGAgugugcAUCCUAAu -3' miRNA: 3'- -UCGuGGUUGCGGUUCCCU------UAGGGUUu -5' |
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2788 | 5' | -53.8 | NC_001491.2 | + | 124654 | 0.73 | 0.582132 |
Target: 5'- -cCGCCAuCGCCGAGGGGAUCaCAAAu -3' miRNA: 3'- ucGUGGUuGCGGUUCCCUUAGgGUUU- -5' |
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2788 | 5' | -53.8 | NC_001491.2 | + | 140970 | 0.76 | 0.470299 |
Target: 5'- aAGCGCCAACcccCCAAGGGugagcGUCCCAc- -3' miRNA: 3'- -UCGUGGUUGc--GGUUCCCu----UAGGGUuu -5' |
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2788 | 5' | -53.8 | NC_001491.2 | + | 116349 | 0.78 | 0.369607 |
Target: 5'- uGGCGCCGcuggugcgcuacaACGCCGAGGGGG-CCCGGg -3' miRNA: 3'- -UCGUGGU-------------UGCGGUUCCCUUaGGGUUu -5' |
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2788 | 5' | -53.8 | NC_001491.2 | + | 138941 | 0.79 | 0.300216 |
Target: 5'- gGGCGCCAGCGUaCAGGGGAGUguaCCCAc- -3' miRNA: 3'- -UCGUGGUUGCG-GUUCCCUUA---GGGUuu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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