miRNA display CGI


Results 1 - 20 of 55 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2789 3' -53 NC_001491.2 + 1788 0.66 0.972917
Target:  5'- cCGucCACGCCCGCGGCcGCucugcccCGCg -3'
miRNA:   3'- uGUuuGUGCGGGUGCCGuUGuca----GUG- -5'
2789 3' -53 NC_001491.2 + 117000 0.66 0.972917
Target:  5'- -gGAACGCGCUCugGGCccugccacacGCGGcCGCc -3'
miRNA:   3'- ugUUUGUGCGGGugCCGu---------UGUCaGUG- -5'
2789 3' -53 NC_001491.2 + 141231 0.66 0.972917
Target:  5'- gAguGugACGUgaGCGGCGACgAGUCGCc -3'
miRNA:   3'- -UguUugUGCGggUGCCGUUG-UCAGUG- -5'
2789 3' -53 NC_001491.2 + 138762 0.66 0.963538
Target:  5'- uGCAGACACGUgCgCGCGGCuGCGGg-GCu -3'
miRNA:   3'- -UGUUUGUGCG-G-GUGCCGuUGUCagUG- -5'
2789 3' -53 NC_001491.2 + 106070 0.66 0.963538
Target:  5'- gGCGAAgGacaGaCCCagcGCGGCGGCAGcCGCg -3'
miRNA:   3'- -UGUUUgUg--C-GGG---UGCCGUUGUCaGUG- -5'
2789 3' -53 NC_001491.2 + 104871 0.66 0.963538
Target:  5'- cUAAGCucaGCCCuugcgaucUGGCAAUAGUCAUg -3'
miRNA:   3'- uGUUUGug-CGGGu-------GCCGUUGUCAGUG- -5'
2789 3' -53 NC_001491.2 + 51408 0.66 0.963538
Target:  5'- cCAGAUACGCUCaggucGCGGUAaaACAG-CACu -3'
miRNA:   3'- uGUUUGUGCGGG-----UGCCGU--UGUCaGUG- -5'
2789 3' -53 NC_001491.2 + 77510 0.66 0.95615
Target:  5'- cGCAGAuCGCGUCUGCGGCGuaaACAG-CGg -3'
miRNA:   3'- -UGUUU-GUGCGGGUGCCGU---UGUCaGUg -5'
2789 3' -53 NC_001491.2 + 128334 0.66 0.95615
Target:  5'- -aAAGCAC-CCCACGGCAcGCGGg--- -3'
miRNA:   3'- ugUUUGUGcGGGUGCCGU-UGUCagug -5'
2789 3' -53 NC_001491.2 + 146403 0.67 0.9521
Target:  5'- uGCuGGCugG-CCGCGGCAGCGG-CGg -3'
miRNA:   3'- -UGuUUGugCgGGUGCCGUUGUCaGUg -5'
2789 3' -53 NC_001491.2 + 60848 0.67 0.95126
Target:  5'- gACAGACgcuccgcguacauGCGCCUGCGcugcgaaGCAuccGCAGUCGCc -3'
miRNA:   3'- -UGUUUG-------------UGCGGGUGC-------CGU---UGUCAGUG- -5'
2789 3' -53 NC_001491.2 + 123071 0.67 0.943263
Target:  5'- gGCGcGCACGaCCGCGGCAA-AGUCc- -3'
miRNA:   3'- -UGUuUGUGCgGGUGCCGUUgUCAGug -5'
2789 3' -53 NC_001491.2 + 106151 0.67 0.938962
Target:  5'- cCAGACACGCCagugaaCGCGGCcaugggaagugcguuGCGGUCGu -3'
miRNA:   3'- uGUUUGUGCGG------GUGCCGu--------------UGUCAGUg -5'
2789 3' -53 NC_001491.2 + 134451 0.67 0.938472
Target:  5'- uACAAGCGCGaCUUGCGGcCAACAGcUC-Ca -3'
miRNA:   3'- -UGUUUGUGC-GGGUGCC-GUUGUC-AGuG- -5'
2789 3' -53 NC_001491.2 + 105263 0.67 0.938472
Target:  5'- uUAGACucuGCcCCCACGGCGAuCAGUCu- -3'
miRNA:   3'- uGUUUG---UGcGGGUGCCGUU-GUCAGug -5'
2789 3' -53 NC_001491.2 + 70423 0.67 0.938472
Target:  5'- gGCAGAgGCGa-CugGGUGGCGGUCAa -3'
miRNA:   3'- -UGUUUgUGCggGugCCGUUGUCAGUg -5'
2789 3' -53 NC_001491.2 + 27876 0.67 0.938472
Target:  5'- cACGAcCACuGUCUACGGUGuccGCAGUCAUc -3'
miRNA:   3'- -UGUUuGUG-CGGGUGCCGU---UGUCAGUG- -5'
2789 3' -53 NC_001491.2 + 39530 0.67 0.938472
Target:  5'- cGCGGGCgGCGCUaauuuCGGCGGCAcgcuGUCGCg -3'
miRNA:   3'- -UGUUUG-UGCGGgu---GCCGUUGU----CAGUG- -5'
2789 3' -53 NC_001491.2 + 92063 0.67 0.933428
Target:  5'- -aGGACGCGCCCACGaCGcCGGUUcugGCg -3'
miRNA:   3'- ugUUUGUGCGGGUGCcGUuGUCAG---UG- -5'
2789 3' -53 NC_001491.2 + 123334 0.67 0.933428
Target:  5'- gGCGAACGCGuguCCCA-GGCAGCAccaGUaCGCg -3'
miRNA:   3'- -UGUUUGUGC---GGGUgCCGUUGU---CA-GUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.