Results 21 - 26 of 26 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 35846 | 0.66 | 0.950371 |
|
Target: 5'- cCCUuaagggucacaACGUCGGCcCGCaGGUcgGCGCg -3' miRNA: 3'- aGGA-----------UGCGGCUGcGCGaCCAaaUGCG- -5' |
|||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 138145 | 0.66 | 0.958241 |
|
Target: 5'- gCCUcucgGCGCCuccuCGcCGCUGGagUugGCg -3' miRNA: 3'- aGGA----UGCGGcu--GC-GCGACCaaAugCG- -5' |
|||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 58142 | 0.66 | 0.958241 |
|
Target: 5'- cUCCUugcucaacagacGCGCCGGCau-CUGG-UUGCGCu -3' miRNA: 3'- -AGGA------------UGCGGCUGcgcGACCaAAUGCG- -5' |
|||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 117261 | 0.66 | 0.961836 |
|
Target: 5'- -gCUACGCCGAgGCGCaGGccccaGUa -3' miRNA: 3'- agGAUGCGGCUgCGCGaCCaaaugCG- -5' |
|||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 80523 | 0.66 | 0.961836 |
|
Target: 5'- uUCCcGCGuCCGGCGCGgC-GGUUgccaGCa -3' miRNA: 3'- -AGGaUGC-GGCUGCGC-GaCCAAaug-CG- -5' |
|||||||
| 2790 | 3' | -54.3 | NC_001491.2 | + | 57121 | 0.66 | 0.961836 |
|
Target: 5'- ---gGCGCUGACGCaaacgaugaaGCgUGGUguggGCGCa -3' miRNA: 3'- aggaUGCGGCUGCG----------CG-ACCAaa--UGCG- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home