miRNA display CGI


Results 1 - 20 of 23 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2790 5' -62 NC_001491.2 + 147269 0.66 0.626319
Target:  5'- gAGGCgGCCGcCUgAGggGaGCGGgCCUUCu -3'
miRNA:   3'- -UUCG-CGGC-GAgUCuuC-CGCC-GGGAGc -5'
2790 5' -62 NC_001491.2 + 144669 0.66 0.606387
Target:  5'- -cGCGCUgGCUgcgCGGAugAGGgGGUCCUCGc -3'
miRNA:   3'- uuCGCGG-CGA---GUCU--UCCgCCGGGAGC- -5'
2790 5' -62 NC_001491.2 + 100580 0.66 0.603401
Target:  5'- gAGGCGuaCCGCUCGGAGgaggagcuguguguGGCGGUgUUCa -3'
miRNA:   3'- -UUCGC--GGCGAGUCUU--------------CCGCCGgGAGc -5'
2790 5' -62 NC_001491.2 + 116349 0.66 0.600418
Target:  5'- uGGCGCCGCUggugcgcuacaacgcCgAGggGGCccgGGCCCgggccUCGg -3'
miRNA:   3'- uUCGCGGCGA---------------G-UCuuCCG---CCGGG-----AGC- -5'
2790 5' -62 NC_001491.2 + 115446 0.66 0.586527
Target:  5'- cGGCGCgCGCuUCGGGGagcuGGCGGCCagCGg -3'
miRNA:   3'- uUCGCG-GCG-AGUCUU----CCGCCGGgaGC- -5'
2790 5' -62 NC_001491.2 + 116764 0.66 0.574668
Target:  5'- -cGCGuCCGCgaagcguacaccCGGGucuGcGCGGCCCUCGg -3'
miRNA:   3'- uuCGC-GGCGa-----------GUCUu--C-CGCCGGGAGC- -5'
2790 5' -62 NC_001491.2 + 4504 0.67 0.566792
Target:  5'- uGGGCGgCGCUUGGGAguuuaaagaguGGUGGCUgUCGg -3'
miRNA:   3'- -UUCGCgGCGAGUCUU-----------CCGCCGGgAGC- -5'
2790 5' -62 NC_001491.2 + 8316 0.67 0.547231
Target:  5'- aGAGCGCUuCaUAG-GGGCGaGCCCUCGu -3'
miRNA:   3'- -UUCGCGGcGaGUCuUCCGC-CGGGAGC- -5'
2790 5' -62 NC_001491.2 + 44393 0.67 0.518313
Target:  5'- gGAGgGCCGCU-----GGCGGCCUUUGa -3'
miRNA:   3'- -UUCgCGGCGAgucuuCCGCCGGGAGC- -5'
2790 5' -62 NC_001491.2 + 44518 0.67 0.518313
Target:  5'- gGAGgGCCGCU-----GGCGGCCUUUGa -3'
miRNA:   3'- -UUCgCGGCGAgucuuCCGCCGGGAGC- -5'
2790 5' -62 NC_001491.2 + 114638 0.68 0.490021
Target:  5'- aGGGCGCCGCgCAGAGccaccGcGCGGCCaaccgauggggaCUCGg -3'
miRNA:   3'- -UUCGCGGCGaGUCUU-----C-CGCCGG------------GAGC- -5'
2790 5' -62 NC_001491.2 + 115842 0.69 0.444562
Target:  5'- cAAGCGgCGCUCcGAGccccuggagccGGCGGCCCa-- -3'
miRNA:   3'- -UUCGCgGCGAGuCUU-----------CCGCCGGGagc -5'
2790 5' -62 NC_001491.2 + 123138 0.69 0.409109
Target:  5'- -cGCGCgGC-CAGGccuccgcGGGCGGCCCggCGc -3'
miRNA:   3'- uuCGCGgCGaGUCU-------UCCGCCGGGa-GC- -5'
2790 5' -62 NC_001491.2 + 115241 0.7 0.393288
Target:  5'- cGGCGCUGCU-----GGCGGCCCUgGg -3'
miRNA:   3'- uUCGCGGCGAgucuuCCGCCGGGAgC- -5'
2790 5' -62 NC_001491.2 + 139983 0.7 0.385122
Target:  5'- -uGCGCCGCgcCGuGGGGCGGUaCCUCGu -3'
miRNA:   3'- uuCGCGGCGa-GUcUUCCGCCG-GGAGC- -5'
2790 5' -62 NC_001491.2 + 118401 0.7 0.377069
Target:  5'- cGAGCcCCGCggagGGAAGGCGaagcggucGCCCUCGg -3'
miRNA:   3'- -UUCGcGGCGag--UCUUCCGC--------CGGGAGC- -5'
2790 5' -62 NC_001491.2 + 145377 0.7 0.3536
Target:  5'- cGGCGCCGgagcggcagcucUUCGGGGuGGCGGCCCcagCGg -3'
miRNA:   3'- uUCGCGGC------------GAGUCUU-CCGCCGGGa--GC- -5'
2790 5' -62 NC_001491.2 + 125601 0.71 0.338537
Target:  5'- gGGGCgGCCGCUgcCGcGgcGGCGGCCgUCGg -3'
miRNA:   3'- -UUCG-CGGCGA--GU-CuuCCGCCGGgAGC- -5'
2790 5' -62 NC_001491.2 + 44580 0.71 0.323945
Target:  5'- uGGCGCCGCU-----GGCGGCCUUUGa -3'
miRNA:   3'- uUCGCGGCGAgucuuCCGCCGGGAGC- -5'
2790 5' -62 NC_001491.2 + 54662 0.72 0.296183
Target:  5'- -cGCGCacaGCUCGGcuuuGAGcGCGGCCCUgGg -3'
miRNA:   3'- uuCGCGg--CGAGUC----UUC-CGCCGGGAgC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.