Results 1 - 20 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2790 | 5' | -62 | NC_001491.2 | + | 147269 | 0.66 | 0.626319 |
Target: 5'- gAGGCgGCCGcCUgAGggGaGCGGgCCUUCu -3' miRNA: 3'- -UUCG-CGGC-GAgUCuuC-CGCC-GGGAGc -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 116764 | 0.66 | 0.574668 |
Target: 5'- -cGCGuCCGCgaagcguacaccCGGGucuGcGCGGCCCUCGg -3' miRNA: 3'- uuCGC-GGCGa-----------GUCUu--C-CGCCGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 115446 | 0.66 | 0.586527 |
Target: 5'- cGGCGCgCGCuUCGGGGagcuGGCGGCCagCGg -3' miRNA: 3'- uUCGCG-GCG-AGUCUU----CCGCCGGgaGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 116349 | 0.66 | 0.600418 |
Target: 5'- uGGCGCCGCUggugcgcuacaacgcCgAGggGGCccgGGCCCgggccUCGg -3' miRNA: 3'- uUCGCGGCGA---------------G-UCuuCCG---CCGGG-----AGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 100580 | 0.66 | 0.603401 |
Target: 5'- gAGGCGuaCCGCUCGGAGgaggagcuguguguGGCGGUgUUCa -3' miRNA: 3'- -UUCGC--GGCGAGUCUU--------------CCGCCGgGAGc -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 144669 | 0.66 | 0.606387 |
Target: 5'- -cGCGCUgGCUgcgCGGAugAGGgGGUCCUCGc -3' miRNA: 3'- uuCGCGG-CGA---GUCU--UCCgCCGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 4504 | 0.67 | 0.566792 |
Target: 5'- uGGGCGgCGCUUGGGAguuuaaagaguGGUGGCUgUCGg -3' miRNA: 3'- -UUCGCgGCGAGUCUU-----------CCGCCGGgAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 8316 | 0.67 | 0.547231 |
Target: 5'- aGAGCGCUuCaUAG-GGGCGaGCCCUCGu -3' miRNA: 3'- -UUCGCGGcGaGUCuUCCGC-CGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 44393 | 0.67 | 0.518313 |
Target: 5'- gGAGgGCCGCU-----GGCGGCCUUUGa -3' miRNA: 3'- -UUCgCGGCGAgucuuCCGCCGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 44518 | 0.67 | 0.518313 |
Target: 5'- gGAGgGCCGCU-----GGCGGCCUUUGa -3' miRNA: 3'- -UUCgCGGCGAgucuuCCGCCGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 114638 | 0.68 | 0.490021 |
Target: 5'- aGGGCGCCGCgCAGAGccaccGcGCGGCCaaccgauggggaCUCGg -3' miRNA: 3'- -UUCGCGGCGaGUCUU-----C-CGCCGG------------GAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 115842 | 0.69 | 0.444562 |
Target: 5'- cAAGCGgCGCUCcGAGccccuggagccGGCGGCCCa-- -3' miRNA: 3'- -UUCGCgGCGAGuCUU-----------CCGCCGGGagc -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 123138 | 0.69 | 0.409109 |
Target: 5'- -cGCGCgGC-CAGGccuccgcGGGCGGCCCggCGc -3' miRNA: 3'- uuCGCGgCGaGUCU-------UCCGCCGGGa-GC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 145377 | 0.7 | 0.3536 |
Target: 5'- cGGCGCCGgagcggcagcucUUCGGGGuGGCGGCCCcagCGg -3' miRNA: 3'- uUCGCGGC------------GAGUCUU-CCGCCGGGa--GC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 118401 | 0.7 | 0.377069 |
Target: 5'- cGAGCcCCGCggagGGAAGGCGaagcggucGCCCUCGg -3' miRNA: 3'- -UUCGcGGCGag--UCUUCCGC--------CGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 139983 | 0.7 | 0.385122 |
Target: 5'- -uGCGCCGCgcCGuGGGGCGGUaCCUCGu -3' miRNA: 3'- uuCGCGGCGa-GUcUUCCGCCG-GGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 115241 | 0.7 | 0.393288 |
Target: 5'- cGGCGCUGCU-----GGCGGCCCUgGg -3' miRNA: 3'- uUCGCGGCGAgucuuCCGCCGGGAgC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 125601 | 0.71 | 0.338537 |
Target: 5'- gGGGCgGCCGCUgcCGcGgcGGCGGCCgUCGg -3' miRNA: 3'- -UUCG-CGGCGA--GU-CuuCCGCCGGgAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 44580 | 0.71 | 0.323945 |
Target: 5'- uGGCGCCGCU-----GGCGGCCUUUGa -3' miRNA: 3'- uUCGCGGCGAgucuuCCGCCGGGAGC- -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 114925 | 0.72 | 0.270306 |
Target: 5'- gGAGCGCCacCUCAGccGcGCGGUCCUCa -3' miRNA: 3'- -UUCGCGGc-GAGUCuuC-CGCCGGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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