Results 21 - 23 of 23 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2790 | 5' | -62 | NC_001491.2 | + | 116521 | 0.72 | 0.292182 |
Target: 5'- gAGGCGCUguGCUCcaacccggccgggcuGGAGacGGCGGCCCUCu -3' miRNA: 3'- -UUCGCGG--CGAG---------------UCUU--CCGCCGGGAGc -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 116377 | 0.72 | 0.2766 |
Target: 5'- -cGCGCCGUUCuGguGGUGGCCCg-- -3' miRNA: 3'- uuCGCGGCGAGuCuuCCGCCGGGagc -5' |
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2790 | 5' | -62 | NC_001491.2 | + | 114925 | 0.72 | 0.270306 |
Target: 5'- gGAGCGCCacCUCAGccGcGCGGUCCUCa -3' miRNA: 3'- -UUCGCGGc-GAGUCuuC-CGCCGGGAGc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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