miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 101921 0.66 0.79005
Target:  5'- cGCCAGCgaaCC-CgACGGCaccgCCAGCUUu -3'
miRNA:   3'- -CGGUCGa--GGuGgUGCCGga--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 78266 0.66 0.79005
Target:  5'- gGCCAGCUgCugUAUaGCC-CUcACCCg -3'
miRNA:   3'- -CGGUCGAgGugGUGcCGGaGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115291 0.66 0.789161
Target:  5'- cGgCGGCUCuCGgCGCGaGCCccucuggUCCGACCUc -3'
miRNA:   3'- -CgGUCGAG-GUgGUGC-CGG-------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58988 0.66 0.787378
Target:  5'- cGCCGGCagCUACCGCuccggcgguuguuuGcGCCUCCAugUUu -3'
miRNA:   3'- -CGGUCGa-GGUGGUG--------------C-CGGAGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 116534 0.66 0.781096
Target:  5'- cGCCuGC-CCucCCGaGGCgcugugCUCCAACCCg -3'
miRNA:   3'- -CGGuCGaGGu-GGUgCCG------GAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 111175 0.66 0.781096
Target:  5'- aGUCGGCgcagCGCCA-GGCUgagaagacgCCAGCCCa -3'
miRNA:   3'- -CGGUCGag--GUGGUgCCGGa--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 147984 0.66 0.772016
Target:  5'- -gCGGUUCC-CCAgGGCCgCCAGCa- -3'
miRNA:   3'- cgGUCGAGGuGGUgCCGGaGGUUGgg -5'
2791 3' -59.5 NC_001491.2 + 138458 0.66 0.772016
Target:  5'- ---cGCUCguCCGCGGguuCCUCCucGCCCu -3'
miRNA:   3'- cgguCGAGguGGUGCC---GGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 118241 0.66 0.772016
Target:  5'- -aCGGUcgCCggGCCACGGgCUCCucaucACCCg -3'
miRNA:   3'- cgGUCGa-GG--UGGUGCCgGAGGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115706 0.66 0.772016
Target:  5'- gGCCaccaGGCUCC-CCG-GGCC-CUggGACCCa -3'
miRNA:   3'- -CGG----UCGAGGuGGUgCCGGaGG--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 78525 0.66 0.772016
Target:  5'- aCCAGCUCaGCCagGCGGgCUaccaCCAGCUCc -3'
miRNA:   3'- cGGUCGAGgUGG--UGCCgGA----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 60664 0.66 0.772016
Target:  5'- cGCCGGCcCCGUCGuCGGUaUCCAcCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU-GCCGgAGGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 61260 0.66 0.771102
Target:  5'- aGCUAGUUCCuCCuugagauGCGGUaa-CAACCCa -3'
miRNA:   3'- -CGGUCGAGGuGG-------UGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 117834 0.66 0.762817
Target:  5'- uGCC-GCUCCGgCGCcGCUUCC--CCCg -3'
miRNA:   3'- -CGGuCGAGGUgGUGcCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 85721 0.66 0.762817
Target:  5'- gGCCuGCgCCGCCACacgucucugggGGugucuCCUCCGGCCa -3'
miRNA:   3'- -CGGuCGaGGUGGUG-----------CC-----GGAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 67658 0.66 0.762817
Target:  5'- cCCAGCUauuuCC-CGGCCUggCAGCCCu -3'
miRNA:   3'- cGGUCGAggu-GGuGCCGGAg-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 49493 0.66 0.753508
Target:  5'- gGCCGGCcauggccguugCCGCCGgGGCCgUCCcgGACgCg -3'
miRNA:   3'- -CGGUCGa----------GGUGGUgCCGG-AGG--UUGgG- -5'
2791 3' -59.5 NC_001491.2 + 106054 0.66 0.744097
Target:  5'- aGCgCGGCggcaGCCGCGGCgaggCCAACCa -3'
miRNA:   3'- -CG-GUCGagg-UGGUGCCGga--GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 89434 0.67 0.734594
Target:  5'- aGCCA-UUCCugUG-GGUCUCCGACCUc -3'
miRNA:   3'- -CGGUcGAGGugGUgCCGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 14905 0.67 0.733639
Target:  5'- gGgCGGgUCCAUCAUGGCCUCgGucguuguACCg -3'
miRNA:   3'- -CgGUCgAGGUGGUGCCGGAGgU-------UGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.