miRNA display CGI


Results 41 - 60 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 146390 0.69 0.566792
Target:  5'- cGgCAGCggCgGCCugGGCCggguagCCGGCCa -3'
miRNA:   3'- -CgGUCGa-GgUGGugCCGGa-----GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 104794 0.69 0.586527
Target:  5'- uCCAGCUCCACguCGuCCaCCGACuCCa -3'
miRNA:   3'- cGGUCGAGGUGguGCcGGaGGUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 68922 0.69 0.570727
Target:  5'- cGUCAGCUCCaacACCAgGGCggaUCCccugaagcugguugcGGCCCg -3'
miRNA:   3'- -CGGUCGAGG---UGGUgCCGg--AGG---------------UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 5399 0.69 0.566792
Target:  5'- cGCCAGCUCCAUaGCGGauguCUgcaggcgcguaaCCAGCUCa -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCg---GA------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 80088 0.69 0.57664
Target:  5'- gGCCAuCUCCACCcaaggaaugGCGGCguagUCCAcCCCa -3'
miRNA:   3'- -CGGUcGAGGUGG---------UGCCGg---AGGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 118321 0.69 0.586527
Target:  5'- aGCCGGCgUC-CC-CGGCaC-CCAGCCCg -3'
miRNA:   3'- -CGGUCGaGGuGGuGCCG-GaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 138623 0.69 0.596444
Target:  5'- cCCAGCUUCAUCACGuaGCgCUCCGAUg- -3'
miRNA:   3'- cGGUCGAGGUGGUGC--CG-GAGGUUGgg -5'
2791 3' -59.5 NC_001491.2 + 15485 0.69 0.606387
Target:  5'- --gAGCUCCGCCGCGcgcGCCgugaugcuggUCCAuguuACCCg -3'
miRNA:   3'- cggUCGAGGUGGUGC---CGG----------AGGU----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 146859 0.69 0.566792
Target:  5'- aCCAGCggCGCCACGGuCCgggCCAccACCa -3'
miRNA:   3'- cGGUCGagGUGGUGCC-GGa--GGU--UGGg -5'
2791 3' -59.5 NC_001491.2 + 94112 0.69 0.596444
Target:  5'- gGCCGGgUgCACC-CGGCCaaCGACCa -3'
miRNA:   3'- -CGGUCgAgGUGGuGCCGGagGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 59860 0.68 0.626319
Target:  5'- aGCCAcGCUUU-CCAaugcaucgaggcCGGCCUCgAACCCc -3'
miRNA:   3'- -CGGU-CGAGGuGGU------------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 110799 0.68 0.626319
Target:  5'- -aCAGCUCCacgagcgaaGCCGCgGGCC-CCAgucGCCUg -3'
miRNA:   3'- cgGUCGAGG---------UGGUG-CCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 37881 0.68 0.626319
Target:  5'- uCCAGCggCAcCCACGGCUugUCCGGgCCu -3'
miRNA:   3'- cGGUCGagGU-GGUGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 137367 0.68 0.626319
Target:  5'- cGCCAcGCgCCGCCGCcugugccugcgGGCCugucgacgUCCGACUCg -3'
miRNA:   3'- -CGGU-CGaGGUGGUG-----------CCGG--------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 85833 0.68 0.636295
Target:  5'- gGCCAaguGUUCguCgCGCGcCCUCCGACCCc -3'
miRNA:   3'- -CGGU---CGAGguG-GUGCcGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58941 0.68 0.636295
Target:  5'- aCCAGCUCCuggGCaGCCUCCAcGCuCCa -3'
miRNA:   3'- cGGUCGAGGuggUGcCGGAGGU-UG-GG- -5'
2791 3' -59.5 NC_001491.2 + 31306 0.68 0.636295
Target:  5'- cGCCaacgAGCUaucaACCACGcuGCCUCCccGCCCg -3'
miRNA:   3'- -CGG----UCGAgg--UGGUGC--CGGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 101324 0.68 0.646269
Target:  5'- uUCAGCUCCGCCgcgucGCGGCUgguuaAACUCa -3'
miRNA:   3'- cGGUCGAGGUGG-----UGCCGGagg--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 59656 0.68 0.647265
Target:  5'- aGCCAGauucacgucaUCCACCGCacgcagaacacguucGCCUUCAACCUc -3'
miRNA:   3'- -CGGUCg---------AGGUGGUGc--------------CGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 143055 0.68 0.665182
Target:  5'- cGCCGGCcCCACCccaucgacguaacACGGCgC-CCcuCCCa -3'
miRNA:   3'- -CGGUCGaGGUGG-------------UGCCG-GaGGuuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.