miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 59656 0.68 0.647265
Target:  5'- aGCCAGauucacgucaUCCACCGCacgcagaacacguucGCCUUCAACCUc -3'
miRNA:   3'- -CGGUCg---------AGGUGGUGc--------------CGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58941 0.68 0.636295
Target:  5'- aCCAGCUCCuggGCaGCCUCCAcGCuCCa -3'
miRNA:   3'- cGGUCGAGGuggUGcCGGAGGU-UG-GG- -5'
2791 3' -59.5 NC_001491.2 + 85833 0.68 0.636295
Target:  5'- gGCCAaguGUUCguCgCGCGcCCUCCGACCCc -3'
miRNA:   3'- -CGGU---CGAGguG-GUGCcGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 81287 0.68 0.626319
Target:  5'- gGCCGGCaucagCUGCCcaaagauUGGCCUUgGGCCCu -3'
miRNA:   3'- -CGGUCGa----GGUGGu------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 137367 0.68 0.626319
Target:  5'- cGCCAcGCgCCGCCGCcugugccugcgGGCCugucgacgUCCGACUCg -3'
miRNA:   3'- -CGGU-CGaGGUGGUG-----------CCGG--------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 37881 0.68 0.626319
Target:  5'- uCCAGCggCAcCCACGGCUugUCCGGgCCu -3'
miRNA:   3'- cGGUCGagGU-GGUGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 110799 0.68 0.626319
Target:  5'- -aCAGCUCCacgagcgaaGCCGCgGGCC-CCAgucGCCUg -3'
miRNA:   3'- cgGUCGAGG---------UGGUG-CCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 59860 0.68 0.626319
Target:  5'- aGCCAcGCUUU-CCAaugcaucgaggcCGGCCUCgAACCCc -3'
miRNA:   3'- -CGGU-CGAGGuGGU------------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 74248 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74184 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74120 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74056 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 73992 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115898 0.67 0.725006
Target:  5'- cCCGGCUCCuCCuCGGaCgaCCGugCCa -3'
miRNA:   3'- cGGUCGAGGuGGuGCC-GgaGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 144249 0.67 0.725006
Target:  5'- cGCCGGCUUCGaguaaguauccCCACcGCgCUUCGACCg -3'
miRNA:   3'- -CGGUCGAGGU-----------GGUGcCG-GAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 145516 0.67 0.725006
Target:  5'- uCCAGCgUCUugGCCAgauUGGCCUCgCGgacGCCCu -3'
miRNA:   3'- cGGUCG-AGG--UGGU---GCCGGAG-GU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 17941 0.67 0.725006
Target:  5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3'
miRNA:   3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 40252 0.67 0.719215
Target:  5'- cGCCAGCUCCcgcucggcggcagugGCgGCGGCag-UAACCUc -3'
miRNA:   3'- -CGGUCGAGG---------------UGgUGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58403 0.67 0.722114
Target:  5'- aGCCGGCUCUacaucuGCCgcgccguugauuguACGGUCgaUCCAGgCCa -3'
miRNA:   3'- -CGGUCGAGG------UGG--------------UGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 140166 0.67 0.685977
Target:  5'- uGCCGcGCUCCgugggggacuuuGCCGCGGUCgugcgcgCCGugUCg -3'
miRNA:   3'- -CGGU-CGAGG------------UGGUGCCGGa------GGUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.