miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 116724 0.67 0.685977
Target:  5'- gGCCccgacgcaaGGCUgCCgcgGCCGCGGCCgcUCCGgggaccagggcGCCCa -3'
miRNA:   3'- -CGG---------UCGA-GG---UGGUGCCGG--AGGU-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 140166 0.67 0.685977
Target:  5'- uGCCGcGCUCCgugggggacuuuGCCGCGGUCgugcgcgCCGugUCg -3'
miRNA:   3'- -CGGU-CGAGG------------UGGUGCCGGa------GGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 115604 0.67 0.685977
Target:  5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3'
miRNA:   3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 84695 0.67 0.685977
Target:  5'- gGCUAGCUCUAUgGCGGUCgCUAAgCUu -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 50824 0.67 0.695818
Target:  5'- -aCGGCUCC--UACGGCCauuuUCgCGGCCCg -3'
miRNA:   3'- cgGUCGAGGugGUGCCGG----AG-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 123108 0.67 0.695818
Target:  5'- cGCC-GCUCCGgagcgcguCCGCuGCCUCC-GCCg -3'
miRNA:   3'- -CGGuCGAGGU--------GGUGcCGGAGGuUGGg -5'
2791 3' -59.5 NC_001491.2 + 147060 0.67 0.705609
Target:  5'- --aGGCUCCccuCCGCGGCCgCgGAgCCg -3'
miRNA:   3'- cggUCGAGGu--GGUGCCGGaGgUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 58694 0.67 0.705609
Target:  5'- uGCCAaaUCC-CC-CGGCCUCgCAgguaaACCCu -3'
miRNA:   3'- -CGGUcgAGGuGGuGCCGGAG-GU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 51300 0.67 0.709509
Target:  5'- aGCaagcGCUCCGCCugaacgcccucugagGCGGCaacgCCGGCCUg -3'
miRNA:   3'- -CGgu--CGAGGUGG---------------UGCCGga--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 40252 0.67 0.719215
Target:  5'- cGCCAGCUCCcgcucggcggcagugGCgGCGGCag-UAACCUc -3'
miRNA:   3'- -CGGUCGAGG---------------UGgUGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116534 0.66 0.781096
Target:  5'- cGCCuGC-CCucCCGaGGCgcugugCUCCAACCCg -3'
miRNA:   3'- -CGGuCGaGGu-GGUgCCG------GAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 111175 0.66 0.781096
Target:  5'- aGUCGGCgcagCGCCA-GGCUgagaagacgCCAGCCCa -3'
miRNA:   3'- -CGGUCGag--GUGGUgCCGGa--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 60664 0.66 0.772016
Target:  5'- cGCCGGCcCCGUCGuCGGUaUCCAcCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU-GCCGgAGGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 118241 0.66 0.772016
Target:  5'- -aCGGUcgCCggGCCACGGgCUCCucaucACCCg -3'
miRNA:   3'- cgGUCGa-GG--UGGUGCCgGAGGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 138458 0.66 0.772016
Target:  5'- ---cGCUCguCCGCGGguuCCUCCucGCCCu -3'
miRNA:   3'- cgguCGAGguGGUGCC---GGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 147984 0.66 0.772016
Target:  5'- -gCGGUUCC-CCAgGGCCgCCAGCa- -3'
miRNA:   3'- cgGUCGAGGuGGUgCCGGaGGUUGgg -5'
2791 3' -59.5 NC_001491.2 + 67658 0.66 0.762817
Target:  5'- cCCAGCUauuuCC-CGGCCUggCAGCCCu -3'
miRNA:   3'- cGGUCGAggu-GGuGCCGGAg-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 85721 0.66 0.762817
Target:  5'- gGCCuGCgCCGCCACacgucucugggGGugucuCCUCCGGCCa -3'
miRNA:   3'- -CGGuCGaGGUGGUG-----------CC-----GGAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 106054 0.66 0.744097
Target:  5'- aGCgCGGCggcaGCCGCGGCgaggCCAACCa -3'
miRNA:   3'- -CG-GUCGagg-UGGUGCCGga--GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 61260 0.66 0.771102
Target:  5'- aGCUAGUUCCuCCuugagauGCGGUaa-CAACCCa -3'
miRNA:   3'- -CGGUCGAGGuGG-------UGCCGgagGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.