Results 101 - 108 of 108 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 147984 | 0.66 | 0.772016 |
Target: 5'- -gCGGUUCC-CCAgGGCCgCCAGCa- -3' miRNA: 3'- cgGUCGAGGuGGUgCCGGaGGUUGgg -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 67658 | 0.66 | 0.762817 |
Target: 5'- cCCAGCUauuuCC-CGGCCUggCAGCCCu -3' miRNA: 3'- cGGUCGAggu-GGuGCCGGAg-GUUGGG- -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 85721 | 0.66 | 0.762817 |
Target: 5'- gGCCuGCgCCGCCACacgucucugggGGugucuCCUCCGGCCa -3' miRNA: 3'- -CGGuCGaGGUGGUG-----------CC-----GGAGGUUGGg -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 117834 | 0.66 | 0.762817 |
Target: 5'- uGCC-GCUCCGgCGCcGCUUCC--CCCg -3' miRNA: 3'- -CGGuCGAGGUgGUGcCGGAGGuuGGG- -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 49493 | 0.66 | 0.753508 |
Target: 5'- gGCCGGCcauggccguugCCGCCGgGGCCgUCCcgGACgCg -3' miRNA: 3'- -CGGUCGa----------GGUGGUgCCGG-AGG--UUGgG- -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 106054 | 0.66 | 0.744097 |
Target: 5'- aGCgCGGCggcaGCCGCGGCgaggCCAACCa -3' miRNA: 3'- -CG-GUCGagg-UGGUGCCGga--GGUUGGg -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 101921 | 0.66 | 0.79005 |
Target: 5'- cGCCAGCgaaCC-CgACGGCaccgCCAGCUUu -3' miRNA: 3'- -CGGUCGa--GGuGgUGCCGga--GGUUGGG- -5' |
|||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 61260 | 0.66 | 0.771102 |
Target: 5'- aGCUAGUUCCuCCuugagauGCGGUaa-CAACCCa -3' miRNA: 3'- -CGGUCGAGGuGG-------UGCCGgagGUUGGG- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home