miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 147405 0.78 0.184698
Target:  5'- gGCCgaGGCUCCgGCCugGGCCgCCGGCuCCa -3'
miRNA:   3'- -CGG--UCGAGG-UGGugCCGGaGGUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 64017 0.78 0.188801
Target:  5'- cGCCGGCggcgCCGagaacgagcguucCCACGGCCUCCcccacuuuACCCa -3'
miRNA:   3'- -CGGUCGa---GGU-------------GGUGCCGGAGGu-------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 19166 0.77 0.213591
Target:  5'- aCCAGCUCCACgGCGGCCacgaUAGCaCCa -3'
miRNA:   3'- cGGUCGAGGUGgUGCCGGag--GUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 115953 0.75 0.289538
Target:  5'- gGCCcGCUCC-CCucagGCGGCCgccuccCCGGCCCa -3'
miRNA:   3'- -CGGuCGAGGuGG----UGCCGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 107101 0.75 0.302946
Target:  5'- gGCCAGUagcugaCCACCuuacagaaauGCGGCCaCCAGCCCc -3'
miRNA:   3'- -CGGUCGa-----GGUGG----------UGCCGGaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 141827 0.75 0.302946
Target:  5'- cCCAGCUCCggcgACCcCGGCCcagCCAugCCc -3'
miRNA:   3'- cGGUCGAGG----UGGuGCCGGa--GGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 116837 0.75 0.302946
Target:  5'- gGCCGGCUacccggcccaggCCGCCGCuGCCgcggCCAGCCa -3'
miRNA:   3'- -CGGUCGA------------GGUGGUGcCGGa---GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 39317 0.74 0.323945
Target:  5'- gGCCuGgUCUACCGCGGCgCUCaaAACCCu -3'
miRNA:   3'- -CGGuCgAGGUGGUGCCG-GAGg-UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 117782 0.74 0.338537
Target:  5'- cGCCcGCUCCcaGCCGCccgggaggaGGCCUCCu-CCCu -3'
miRNA:   3'- -CGGuCGAGG--UGGUG---------CCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 141877 0.73 0.3536
Target:  5'- cCCAGCUCCggcgACCcCGGC--CCAGCCCa -3'
miRNA:   3'- cGGUCGAGG----UGGuGCCGgaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 139717 0.73 0.36913
Target:  5'- cGCCAcGCagCCGCCGCGGCgUaCCugcgcGCCCg -3'
miRNA:   3'- -CGGU-CGa-GGUGGUGCCGgA-GGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 148673 0.73 0.36913
Target:  5'- --aAGCUCCGagggcuCCACGGCC-CCAGCgCCg -3'
miRNA:   3'- cggUCGAGGU------GGUGCCGGaGGUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 116165 0.73 0.384311
Target:  5'- uCCGGCUCCgcgGCCGCGgaggggaGCCUUCAgACCCu -3'
miRNA:   3'- cGGUCGAGG---UGGUGC-------CGGAGGU-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 125526 0.73 0.384311
Target:  5'- cGCCcGCUCgGuCCACGGCCgccgCCGcgacgccGCCCc -3'
miRNA:   3'- -CGGuCGAGgU-GGUGCCGGa---GGU-------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 144306 0.73 0.385122
Target:  5'- cGCCgAGCUCCGCCGaGGCagaagCC-GCCCg -3'
miRNA:   3'- -CGG-UCGAGGUGGUgCCGga---GGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 93608 0.72 0.401565
Target:  5'- gGCgAGCUCCACgcUGGCCguagCAACCCa -3'
miRNA:   3'- -CGgUCGAGGUGguGCCGGag--GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 34492 0.72 0.409952
Target:  5'- gGCguGCUCgGCCACGcgcGCC-CUGGCCCg -3'
miRNA:   3'- -CGguCGAGgUGGUGC---CGGaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118634 0.72 0.409952
Target:  5'- aGCUAGCa-CGCCAUGGCCagCCAGCgCa -3'
miRNA:   3'- -CGGUCGagGUGGUGCCGGa-GGUUGgG- -5'
2791 3' -59.5 NC_001491.2 + 115478 0.72 0.418448
Target:  5'- -gCGGC-CCGCUgcaGCGGCCccCCGGCCCg -3'
miRNA:   3'- cgGUCGaGGUGG---UGCCGGa-GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 41486 0.72 0.427049
Target:  5'- cGCCuGCUggagCCAcuCCACGGCCuuaauaUCCAGCUCu -3'
miRNA:   3'- -CGGuCGA----GGU--GGUGCCGG------AGGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.