miRNA display CGI


Results 21 - 40 of 108 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 146977 0.72 0.444562
Target:  5'- gGCCAGCagggaCACGGCCUCC--CCCa -3'
miRNA:   3'- -CGGUCGaggugGUGCCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 118362 0.72 0.444562
Target:  5'- cGCCGGCa--GCgGCGGuCCUCCuACCCc -3'
miRNA:   3'- -CGGUCGaggUGgUGCC-GGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 104648 0.71 0.466097
Target:  5'- cGCCAGCUCCuccacaaacggguagACCGgGGCgCUCguguACCCc -3'
miRNA:   3'- -CGGUCGAGG---------------UGGUgCCG-GAGgu--UGGG- -5'
2791 3' -59.5 NC_001491.2 + 137623 0.71 0.471565
Target:  5'- -aCGGCcgCCGCCGCGGCagcggCCGcCCCg -3'
miRNA:   3'- cgGUCGa-GGUGGUGCCGga---GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 115819 0.71 0.478906
Target:  5'- aGCCGGCggCCcaggccggaGCCuCGGCCUCCuucuccucguccGCCCg -3'
miRNA:   3'- -CGGUCGa-GG---------UGGuGCCGGAGGu-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 147774 0.71 0.499375
Target:  5'- cGCCAGCUCC-CCgaagcGCGcGCCgucCCGGgCCg -3'
miRNA:   3'- -CGGUCGAGGuGG-----UGC-CGGa--GGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 125190 0.7 0.508807
Target:  5'- cGCCGGCaccgaggucuUCCGCUGCGcgcucgcucgccGCCgcaaugCCAACCCg -3'
miRNA:   3'- -CGGUCG----------AGGUGGUGC------------CGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 42028 0.7 0.527889
Target:  5'- aGCaAGCUCCugUacGCGGCauacucugcgCCAACCCa -3'
miRNA:   3'- -CGgUCGAGGugG--UGCCGga--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 117901 0.7 0.53753
Target:  5'- cGCCGGCUCUcCCG-GGCCguccUCCGgaggggaucGCCCg -3'
miRNA:   3'- -CGGUCGAGGuGGUgCCGG----AGGU---------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 24285 0.7 0.554054
Target:  5'- aCCGGCUCCcagaggggcugcauGCCauguaccuggGCGGCCUCCAaaGCUUu -3'
miRNA:   3'- cGGUCGAGG--------------UGG----------UGCCGGAGGU--UGGG- -5'
2791 3' -59.5 NC_001491.2 + 148912 0.7 0.556987
Target:  5'- aCCAGCUCCACaucgcCGGCCccgUCGAUCUc -3'
miRNA:   3'- cGGUCGAGGUGgu---GCCGGa--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 104169 0.7 0.556987
Target:  5'- gGCCAuGCgCCugUAC-GCCUCCcgGACCCu -3'
miRNA:   3'- -CGGU-CGaGGugGUGcCGGAGG--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118730 0.7 0.556987
Target:  5'- cGCC-GCggaaccCCGCCAcCGGCCacccgCCAACCUu -3'
miRNA:   3'- -CGGuCGa-----GGUGGU-GCCGGa----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 146859 0.69 0.566792
Target:  5'- aCCAGCggCGCCACGGuCCgggCCAccACCa -3'
miRNA:   3'- cGGUCGagGUGGUGCC-GGa--GGU--UGGg -5'
2791 3' -59.5 NC_001491.2 + 146390 0.69 0.566792
Target:  5'- cGgCAGCggCgGCCugGGCCggguagCCGGCCa -3'
miRNA:   3'- -CgGUCGa-GgUGGugCCGGa-----GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 144373 0.69 0.566792
Target:  5'- cGCgGGCg--GCCugGGCCUCUccCCCg -3'
miRNA:   3'- -CGgUCGaggUGGugCCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 5399 0.69 0.566792
Target:  5'- cGCCAGCUCCAUaGCGGauguCUgcaggcgcguaaCCAGCUCa -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCg---GA------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 68922 0.69 0.570727
Target:  5'- cGUCAGCUCCaacACCAgGGCggaUCCccugaagcugguugcGGCCCg -3'
miRNA:   3'- -CGGUCGAGG---UGGUgCCGg--AGG---------------UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116444 0.69 0.57664
Target:  5'- gGCCAgGCUCC-UCGgGGaCUCUGACCCu -3'
miRNA:   3'- -CGGU-CGAGGuGGUgCCgGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 80088 0.69 0.57664
Target:  5'- gGCCAuCUCCACCcaaggaaugGCGGCguagUCCAcCCCa -3'
miRNA:   3'- -CGGUcGAGGUGG---------UGCCGg---AGGUuGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.