miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 143055 0.68 0.665182
Target:  5'- cGCCGGCcCCACCccaucgacguaacACGGCgC-CCcuCCCa -3'
miRNA:   3'- -CGGUCGaGGUGG-------------UGCCG-GaGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 144569 0.68 0.666175
Target:  5'- uGCUAGCUCCGgcuUCGgGGUCgagaaCCAACCg -3'
miRNA:   3'- -CGGUCGAGGU---GGUgCCGGa----GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 140995 0.68 0.666175
Target:  5'- cGCUAGCgCUGCCAaaaaGcGCCgcaagcgCCAACCCc -3'
miRNA:   3'- -CGGUCGaGGUGGUg---C-CGGa------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 42559 0.68 0.666175
Target:  5'- aGCCAGCaCUGCCGCguauaucucGGCCg-CAGCCUg -3'
miRNA:   3'- -CGGUCGaGGUGGUG---------CCGGagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118543 0.68 0.670146
Target:  5'- uCCGcGCagCCAgCGCGGCCgaagagggguucacCCAGCCCg -3'
miRNA:   3'- cGGU-CGa-GGUgGUGCCGGa-------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 37841 0.68 0.676093
Target:  5'- uCCAcucCUCCAUCGuucaaGGCCUCC-GCCCa -3'
miRNA:   3'- cGGUc--GAGGUGGUg----CCGGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 89272 0.68 0.676093
Target:  5'- cGCCGaCUgCAgCUugGGCCUCC-ACUCg -3'
miRNA:   3'- -CGGUcGAgGU-GGugCCGGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 47634 0.68 0.680051
Target:  5'- cGCCAGCaucUCCAgCGCGuucGCCUCgGagcgggugaaacgccGCCCu -3'
miRNA:   3'- -CGGUCG---AGGUgGUGC---CGGAGgU---------------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 84695 0.67 0.685977
Target:  5'- gGCUAGCUCUAUgGCGGUCgCUAAgCUu -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 140166 0.67 0.685977
Target:  5'- uGCCGcGCUCCgugggggacuuuGCCGCGGUCgugcgcgCCGugUCg -3'
miRNA:   3'- -CGGU-CGAGG------------UGGUGCCGGa------GGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 116724 0.67 0.685977
Target:  5'- gGCCccgacgcaaGGCUgCCgcgGCCGCGGCCgcUCCGgggaccagggcGCCCa -3'
miRNA:   3'- -CGG---------UCGA-GG---UGGUGCCGG--AGGU-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115604 0.67 0.685977
Target:  5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3'
miRNA:   3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 123108 0.67 0.695818
Target:  5'- cGCC-GCUCCGgagcgcguCCGCuGCCUCC-GCCg -3'
miRNA:   3'- -CGGuCGAGGU--------GGUGcCGGAGGuUGGg -5'
2791 3' -59.5 NC_001491.2 + 50824 0.67 0.695818
Target:  5'- -aCGGCUCC--UACGGCCauuuUCgCGGCCCg -3'
miRNA:   3'- cgGUCGAGGugGUGCCGG----AG-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 147060 0.67 0.705609
Target:  5'- --aGGCUCCccuCCGCGGCCgCgGAgCCg -3'
miRNA:   3'- cggUCGAGGu--GGUGCCGGaGgUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 58694 0.67 0.705609
Target:  5'- uGCCAaaUCC-CC-CGGCCUCgCAgguaaACCCu -3'
miRNA:   3'- -CGGUcgAGGuGGuGCCGGAG-GU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 51300 0.67 0.709509
Target:  5'- aGCaagcGCUCCGCCugaacgcccucugagGCGGCaacgCCGGCCUg -3'
miRNA:   3'- -CGgu--CGAGGUGG---------------UGCCGga--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 40252 0.67 0.719215
Target:  5'- cGCCAGCUCCcgcucggcggcagugGCgGCGGCag-UAACCUc -3'
miRNA:   3'- -CGGUCGAGG---------------UGgUGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58403 0.67 0.722114
Target:  5'- aGCCGGCUCUacaucuGCCgcgccguugauuguACGGUCgaUCCAGgCCa -3'
miRNA:   3'- -CGGUCGAGG------UGG--------------UGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 17941 0.67 0.725006
Target:  5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3'
miRNA:   3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.