miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 17941 0.67 0.725006
Target:  5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3'
miRNA:   3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 145516 0.67 0.725006
Target:  5'- uCCAGCgUCUugGCCAgauUGGCCUCgCGgacGCCCu -3'
miRNA:   3'- cGGUCG-AGG--UGGU---GCCGGAG-GU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 144249 0.67 0.725006
Target:  5'- cGCCGGCUUCGaguaaguauccCCACcGCgCUUCGACCg -3'
miRNA:   3'- -CGGUCGAGGU-----------GGUGcCG-GAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 115898 0.67 0.725006
Target:  5'- cCCGGCUCCuCCuCGGaCgaCCGugCCa -3'
miRNA:   3'- cGGUCGAGGuGGuGCC-GgaGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 74248 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74184 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74120 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74056 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 73992 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 58403 0.67 0.722114
Target:  5'- aGCCGGCUCUacaucuGCCgcgccguugauuguACGGUCgaUCCAGgCCa -3'
miRNA:   3'- -CGGUCGAGG------UGG--------------UGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 40252 0.67 0.719215
Target:  5'- cGCCAGCUCCcgcucggcggcagugGCgGCGGCag-UAACCUc -3'
miRNA:   3'- -CGGUCGAGG---------------UGgUGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 51300 0.67 0.709509
Target:  5'- aGCaagcGCUCCGCCugaacgcccucugagGCGGCaacgCCGGCCUg -3'
miRNA:   3'- -CGgu--CGAGGUGG---------------UGCCGga--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 147060 0.67 0.705609
Target:  5'- --aGGCUCCccuCCGCGGCCgCgGAgCCg -3'
miRNA:   3'- cggUCGAGGu--GGUGCCGGaGgUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 58694 0.67 0.705609
Target:  5'- uGCCAaaUCC-CC-CGGCCUCgCAgguaaACCCu -3'
miRNA:   3'- -CGGUcgAGGuGGuGCCGGAG-GU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 123108 0.67 0.695818
Target:  5'- cGCC-GCUCCGgagcgcguCCGCuGCCUCC-GCCg -3'
miRNA:   3'- -CGGuCGAGGU--------GGUGcCGGAGGuUGGg -5'
2791 3' -59.5 NC_001491.2 + 50824 0.67 0.695818
Target:  5'- -aCGGCUCC--UACGGCCauuuUCgCGGCCCg -3'
miRNA:   3'- cgGUCGAGGugGUGCCGG----AG-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 84695 0.67 0.685977
Target:  5'- gGCUAGCUCUAUgGCGGUCgCUAAgCUu -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 115604 0.67 0.685977
Target:  5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3'
miRNA:   3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 116724 0.67 0.685977
Target:  5'- gGCCccgacgcaaGGCUgCCgcgGCCGCGGCCgcUCCGgggaccagggcGCCCa -3'
miRNA:   3'- -CGG---------UCGA-GG---UGGUGCCGG--AGGU-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 140166 0.67 0.685977
Target:  5'- uGCCGcGCUCCgugggggacuuuGCCGCGGUCgugcgcgCCGugUCg -3'
miRNA:   3'- -CGGU-CGAGG------------UGGUGCCGGa------GGUugGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.