miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 47634 0.68 0.680051
Target:  5'- cGCCAGCaucUCCAgCGCGuucGCCUCgGagcgggugaaacgccGCCCu -3'
miRNA:   3'- -CGGUCG---AGGUgGUGC---CGGAGgU---------------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 89272 0.68 0.676093
Target:  5'- cGCCGaCUgCAgCUugGGCCUCC-ACUCg -3'
miRNA:   3'- -CGGUcGAgGU-GGugCCGGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 37841 0.68 0.676093
Target:  5'- uCCAcucCUCCAUCGuucaaGGCCUCC-GCCCa -3'
miRNA:   3'- cGGUc--GAGGUGGUg----CCGGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118543 0.68 0.670146
Target:  5'- uCCGcGCagCCAgCGCGGCCgaagagggguucacCCAGCCCg -3'
miRNA:   3'- cGGU-CGa-GGUgGUGCCGGa-------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 144569 0.68 0.666175
Target:  5'- uGCUAGCUCCGgcuUCGgGGUCgagaaCCAACCg -3'
miRNA:   3'- -CGGUCGAGGU---GGUgCCGGa----GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 140995 0.68 0.666175
Target:  5'- cGCUAGCgCUGCCAaaaaGcGCCgcaagcgCCAACCCc -3'
miRNA:   3'- -CGGUCGaGGUGGUg---C-CGGa------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 42559 0.68 0.666175
Target:  5'- aGCCAGCaCUGCCGCguauaucucGGCCg-CAGCCUg -3'
miRNA:   3'- -CGGUCGaGGUGGUG---------CCGGagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 143055 0.68 0.665182
Target:  5'- cGCCGGCcCCACCccaucgacguaacACGGCgC-CCcuCCCa -3'
miRNA:   3'- -CGGUCGaGGUGG-------------UGCCG-GaGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 59656 0.68 0.647265
Target:  5'- aGCCAGauucacgucaUCCACCGCacgcagaacacguucGCCUUCAACCUc -3'
miRNA:   3'- -CGGUCg---------AGGUGGUGc--------------CGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 101324 0.68 0.646269
Target:  5'- uUCAGCUCCGCCgcgucGCGGCUgguuaAACUCa -3'
miRNA:   3'- cGGUCGAGGUGG-----UGCCGGagg--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 31306 0.68 0.636295
Target:  5'- cGCCaacgAGCUaucaACCACGcuGCCUCCccGCCCg -3'
miRNA:   3'- -CGG----UCGAgg--UGGUGC--CGGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 58941 0.68 0.636295
Target:  5'- aCCAGCUCCuggGCaGCCUCCAcGCuCCa -3'
miRNA:   3'- cGGUCGAGGuggUGcCGGAGGU-UG-GG- -5'
2791 3' -59.5 NC_001491.2 + 85833 0.68 0.636295
Target:  5'- gGCCAaguGUUCguCgCGCGcCCUCCGACCCc -3'
miRNA:   3'- -CGGU---CGAGguG-GUGCcGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 59860 0.68 0.626319
Target:  5'- aGCCAcGCUUU-CCAaugcaucgaggcCGGCCUCgAACCCc -3'
miRNA:   3'- -CGGU-CGAGGuGGU------------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 110799 0.68 0.626319
Target:  5'- -aCAGCUCCacgagcgaaGCCGCgGGCC-CCAgucGCCUg -3'
miRNA:   3'- cgGUCGAGG---------UGGUG-CCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 37881 0.68 0.626319
Target:  5'- uCCAGCggCAcCCACGGCUugUCCGGgCCu -3'
miRNA:   3'- cGGUCGagGU-GGUGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 137367 0.68 0.626319
Target:  5'- cGCCAcGCgCCGCCGCcugugccugcgGGCCugucgacgUCCGACUCg -3'
miRNA:   3'- -CGGU-CGaGGUGGUG-----------CCGG--------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 81287 0.68 0.626319
Target:  5'- gGCCGGCaucagCUGCCcaaagauUGGCCUUgGGCCCu -3'
miRNA:   3'- -CGGUCGa----GGUGGu------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115056 0.69 0.616347
Target:  5'- cGCaAGCUCCuggugcuggaCGCGGUCUCCAccgaggauugGCCCc -3'
miRNA:   3'- -CGgUCGAGGug--------GUGCCGGAGGU----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 116227 0.69 0.616347
Target:  5'- uGCUGGCcCCACCGacuCGGUC-CCAgcaGCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU---GCCGGaGGU---UGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.