Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 15485 | 0.69 | 0.606387 |
Target: 5'- --gAGCUCCGCCGCGcgcGCCgugaugcuggUCCAuguuACCCg -3' miRNA: 3'- cggUCGAGGUGGUGC---CGG----------AGGU----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 64104 | 0.69 | 0.606387 |
Target: 5'- gGCCGGCgauUACCAgcaGGCCgauggCUAGCCCc -3' miRNA: 3'- -CGGUCGag-GUGGUg--CCGGa----GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 13422 | 0.69 | 0.596444 |
Target: 5'- aCCAauauGCgaaUCGCCGCGGCCUUCAgaaACCUg -3' miRNA: 3'- cGGU----CGa--GGUGGUGCCGGAGGU---UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 94112 | 0.69 | 0.596444 |
Target: 5'- gGCCGGgUgCACC-CGGCCaaCGACCa -3' miRNA: 3'- -CGGUCgAgGUGGuGCCGGagGUUGGg -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 54504 | 0.69 | 0.596444 |
Target: 5'- aGCCAGCUCUcuACUAUagaguaucuGCCUCCAGCagCCg -3' miRNA: 3'- -CGGUCGAGG--UGGUGc--------CGGAGGUUG--GG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 138623 | 0.69 | 0.596444 |
Target: 5'- cCCAGCUUCAUCACGuaGCgCUCCGAUg- -3' miRNA: 3'- cGGUCGAGGUGGUGC--CG-GAGGUUGgg -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 104794 | 0.69 | 0.586527 |
Target: 5'- uCCAGCUCCACguCGuCCaCCGACuCCa -3' miRNA: 3'- cGGUCGAGGUGguGCcGGaGGUUG-GG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 118321 | 0.69 | 0.586527 |
Target: 5'- aGCCGGCgUC-CC-CGGCaC-CCAGCCCg -3' miRNA: 3'- -CGGUCGaGGuGGuGCCG-GaGGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 80088 | 0.69 | 0.57664 |
Target: 5'- gGCCAuCUCCACCcaaggaaugGCGGCguagUCCAcCCCa -3' miRNA: 3'- -CGGUcGAGGUGG---------UGCCGg---AGGUuGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 116444 | 0.69 | 0.57664 |
Target: 5'- gGCCAgGCUCC-UCGgGGaCUCUGACCCu -3' miRNA: 3'- -CGGU-CGAGGuGGUgCCgGAGGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 68922 | 0.69 | 0.570727 |
Target: 5'- cGUCAGCUCCaacACCAgGGCggaUCCccugaagcugguugcGGCCCg -3' miRNA: 3'- -CGGUCGAGG---UGGUgCCGg--AGG---------------UUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 146859 | 0.69 | 0.566792 |
Target: 5'- aCCAGCggCGCCACGGuCCgggCCAccACCa -3' miRNA: 3'- cGGUCGagGUGGUGCC-GGa--GGU--UGGg -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 146390 | 0.69 | 0.566792 |
Target: 5'- cGgCAGCggCgGCCugGGCCggguagCCGGCCa -3' miRNA: 3'- -CgGUCGa-GgUGGugCCGGa-----GGUUGGg -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 144373 | 0.69 | 0.566792 |
Target: 5'- cGCgGGCg--GCCugGGCCUCUccCCCg -3' miRNA: 3'- -CGgUCGaggUGGugCCGGAGGuuGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 5399 | 0.69 | 0.566792 |
Target: 5'- cGCCAGCUCCAUaGCGGauguCUgcaggcgcguaaCCAGCUCa -3' miRNA: 3'- -CGGUCGAGGUGgUGCCg---GA------------GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 118730 | 0.7 | 0.556987 |
Target: 5'- cGCC-GCggaaccCCGCCAcCGGCCacccgCCAACCUu -3' miRNA: 3'- -CGGuCGa-----GGUGGU-GCCGGa----GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 104169 | 0.7 | 0.556987 |
Target: 5'- gGCCAuGCgCCugUAC-GCCUCCcgGACCCu -3' miRNA: 3'- -CGGU-CGaGGugGUGcCGGAGG--UUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 148912 | 0.7 | 0.556987 |
Target: 5'- aCCAGCUCCACaucgcCGGCCccgUCGAUCUc -3' miRNA: 3'- cGGUCGAGGUGgu---GCCGGa--GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 24285 | 0.7 | 0.554054 |
Target: 5'- aCCGGCUCCcagaggggcugcauGCCauguaccuggGCGGCCUCCAaaGCUUu -3' miRNA: 3'- cGGUCGAGG--------------UGG----------UGCCGGAGGU--UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 117901 | 0.7 | 0.53753 |
Target: 5'- cGCCGGCUCUcCCG-GGCCguccUCCGgaggggaucGCCCg -3' miRNA: 3'- -CGGUCGAGGuGGUgCCGG----AGGU---------UGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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