miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 42028 0.7 0.527889
Target:  5'- aGCaAGCUCCugUacGCGGCauacucugcgCCAACCCa -3'
miRNA:   3'- -CGgUCGAGGugG--UGCCGga--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 125190 0.7 0.508807
Target:  5'- cGCCGGCaccgaggucuUCCGCUGCGcgcucgcucgccGCCgcaaugCCAACCCg -3'
miRNA:   3'- -CGGUCG----------AGGUGGUGC------------CGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 147774 0.71 0.499375
Target:  5'- cGCCAGCUCC-CCgaagcGCGcGCCgucCCGGgCCg -3'
miRNA:   3'- -CGGUCGAGGuGG-----UGC-CGGa--GGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 115819 0.71 0.478906
Target:  5'- aGCCGGCggCCcaggccggaGCCuCGGCCUCCuucuccucguccGCCCg -3'
miRNA:   3'- -CGGUCGa-GG---------UGGuGCCGGAGGu-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 137623 0.71 0.471565
Target:  5'- -aCGGCcgCCGCCGCGGCagcggCCGcCCCg -3'
miRNA:   3'- cgGUCGa-GGUGGUGCCGga---GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 104648 0.71 0.466097
Target:  5'- cGCCAGCUCCuccacaaacggguagACCGgGGCgCUCguguACCCc -3'
miRNA:   3'- -CGGUCGAGG---------------UGGUgCCG-GAGgu--UGGG- -5'
2791 3' -59.5 NC_001491.2 + 118362 0.72 0.444562
Target:  5'- cGCCGGCa--GCgGCGGuCCUCCuACCCc -3'
miRNA:   3'- -CGGUCGaggUGgUGCC-GGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 146977 0.72 0.444562
Target:  5'- gGCCAGCagggaCACGGCCUCC--CCCa -3'
miRNA:   3'- -CGGUCGaggugGUGCCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 41486 0.72 0.427049
Target:  5'- cGCCuGCUggagCCAcuCCACGGCCuuaauaUCCAGCUCu -3'
miRNA:   3'- -CGGuCGA----GGU--GGUGCCGG------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115478 0.72 0.418448
Target:  5'- -gCGGC-CCGCUgcaGCGGCCccCCGGCCCg -3'
miRNA:   3'- cgGUCGaGGUGG---UGCCGGa-GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 34492 0.72 0.409952
Target:  5'- gGCguGCUCgGCCACGcgcGCC-CUGGCCCg -3'
miRNA:   3'- -CGguCGAGgUGGUGC---CGGaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118634 0.72 0.409952
Target:  5'- aGCUAGCa-CGCCAUGGCCagCCAGCgCa -3'
miRNA:   3'- -CGGUCGagGUGGUGCCGGa-GGUUGgG- -5'
2791 3' -59.5 NC_001491.2 + 93608 0.72 0.401565
Target:  5'- gGCgAGCUCCACgcUGGCCguagCAACCCa -3'
miRNA:   3'- -CGgUCGAGGUGguGCCGGag--GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 144306 0.73 0.385122
Target:  5'- cGCCgAGCUCCGCCGaGGCagaagCC-GCCCg -3'
miRNA:   3'- -CGG-UCGAGGUGGUgCCGga---GGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116165 0.73 0.384311
Target:  5'- uCCGGCUCCgcgGCCGCGgaggggaGCCUUCAgACCCu -3'
miRNA:   3'- cGGUCGAGG---UGGUGC-------CGGAGGU-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 125526 0.73 0.384311
Target:  5'- cGCCcGCUCgGuCCACGGCCgccgCCGcgacgccGCCCc -3'
miRNA:   3'- -CGGuCGAGgU-GGUGCCGGa---GGU-------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 139717 0.73 0.36913
Target:  5'- cGCCAcGCagCCGCCGCGGCgUaCCugcgcGCCCg -3'
miRNA:   3'- -CGGU-CGa-GGUGGUGCCGgA-GGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 148673 0.73 0.36913
Target:  5'- --aAGCUCCGagggcuCCACGGCC-CCAGCgCCg -3'
miRNA:   3'- cggUCGAGGU------GGUGCCGGaGGUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 141877 0.73 0.3536
Target:  5'- cCCAGCUCCggcgACCcCGGC--CCAGCCCa -3'
miRNA:   3'- cGGUCGAGG----UGGuGCCGgaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 117782 0.74 0.338537
Target:  5'- cGCCcGCUCCcaGCCGCccgggaggaGGCCUCCu-CCCu -3'
miRNA:   3'- -CGGuCGAGG--UGGUG---------CCGGAGGuuGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.