Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
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| Predicted miRNA align pattern | |||||||
| 2791 | 3' | -59.5 | NC_001491.2 | + | 39317 | 0.74 | 0.323945 |
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Target: 5'- gGCCuGgUCUACCGCGGCgCUCaaAACCCu -3' miRNA: 3'- -CGGuCgAGGUGGUGCCG-GAGg-UUGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 107101 | 0.75 | 0.302946 |
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Target: 5'- gGCCAGUagcugaCCACCuuacagaaauGCGGCCaCCAGCCCc -3' miRNA: 3'- -CGGUCGa-----GGUGG----------UGCCGGaGGUUGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 141827 | 0.75 | 0.302946 |
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Target: 5'- cCCAGCUCCggcgACCcCGGCCcagCCAugCCc -3' miRNA: 3'- cGGUCGAGG----UGGuGCCGGa--GGUugGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 116837 | 0.75 | 0.302946 |
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Target: 5'- gGCCGGCUacccggcccaggCCGCCGCuGCCgcggCCAGCCa -3' miRNA: 3'- -CGGUCGA------------GGUGGUGcCGGa---GGUUGGg -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 115953 | 0.75 | 0.289538 |
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Target: 5'- gGCCcGCUCC-CCucagGCGGCCgccuccCCGGCCCa -3' miRNA: 3'- -CGGuCGAGGuGG----UGCCGGa-----GGUUGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 19166 | 0.77 | 0.213591 |
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Target: 5'- aCCAGCUCCACgGCGGCCacgaUAGCaCCa -3' miRNA: 3'- cGGUCGAGGUGgUGCCGGag--GUUG-GG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 64017 | 0.78 | 0.188801 |
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Target: 5'- cGCCGGCggcgCCGagaacgagcguucCCACGGCCUCCcccacuuuACCCa -3' miRNA: 3'- -CGGUCGa---GGU-------------GGUGCCGGAGGu-------UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147405 | 0.78 | 0.184698 |
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Target: 5'- gGCCgaGGCUCCgGCCugGGCCgCCGGCuCCa -3' miRNA: 3'- -CGG--UCGAGG-UGGugCCGGaGGUUG-GG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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