miRNA display CGI


Results 1 - 20 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 5399 0.69 0.566792
Target:  5'- cGCCAGCUCCAUaGCGGauguCUgcaggcgcguaaCCAGCUCa -3'
miRNA:   3'- -CGGUCGAGGUGgUGCCg---GA------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 13422 0.69 0.596444
Target:  5'- aCCAauauGCgaaUCGCCGCGGCCUUCAgaaACCUg -3'
miRNA:   3'- cGGU----CGa--GGUGGUGCCGGAGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 14905 0.67 0.733639
Target:  5'- gGgCGGgUCCAUCAUGGCCUCgGucguuguACCg -3'
miRNA:   3'- -CgGUCgAGGUGGUGCCGGAGgU-------UGGg -5'
2791 3' -59.5 NC_001491.2 + 15485 0.69 0.606387
Target:  5'- --gAGCUCCGCCGCGcgcGCCgugaugcuggUCCAuguuACCCg -3'
miRNA:   3'- cggUCGAGGUGGUGC---CGG----------AGGU----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 17941 0.67 0.725006
Target:  5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3'
miRNA:   3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 19166 0.77 0.213591
Target:  5'- aCCAGCUCCACgGCGGCCacgaUAGCaCCa -3'
miRNA:   3'- cGGUCGAGGUGgUGCCGGag--GUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 24285 0.7 0.554054
Target:  5'- aCCGGCUCCcagaggggcugcauGCCauguaccuggGCGGCCUCCAaaGCUUu -3'
miRNA:   3'- cGGUCGAGG--------------UGG----------UGCCGGAGGU--UGGG- -5'
2791 3' -59.5 NC_001491.2 + 31306 0.68 0.636295
Target:  5'- cGCCaacgAGCUaucaACCACGcuGCCUCCccGCCCg -3'
miRNA:   3'- -CGG----UCGAgg--UGGUGC--CGGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 34492 0.72 0.409952
Target:  5'- gGCguGCUCgGCCACGcgcGCC-CUGGCCCg -3'
miRNA:   3'- -CGguCGAGgUGGUGC---CGGaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 37841 0.68 0.676093
Target:  5'- uCCAcucCUCCAUCGuucaaGGCCUCC-GCCCa -3'
miRNA:   3'- cGGUc--GAGGUGGUg----CCGGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 37881 0.68 0.626319
Target:  5'- uCCAGCggCAcCCACGGCUugUCCGGgCCu -3'
miRNA:   3'- cGGUCGagGU-GGUGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 39317 0.74 0.323945
Target:  5'- gGCCuGgUCUACCGCGGCgCUCaaAACCCu -3'
miRNA:   3'- -CGGuCgAGGUGGUGCCG-GAGg-UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 40252 0.67 0.719215
Target:  5'- cGCCAGCUCCcgcucggcggcagugGCgGCGGCag-UAACCUc -3'
miRNA:   3'- -CGGUCGAGG---------------UGgUGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 41486 0.72 0.427049
Target:  5'- cGCCuGCUggagCCAcuCCACGGCCuuaauaUCCAGCUCu -3'
miRNA:   3'- -CGGuCGA----GGU--GGUGCCGG------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 42028 0.7 0.527889
Target:  5'- aGCaAGCUCCugUacGCGGCauacucugcgCCAACCCa -3'
miRNA:   3'- -CGgUCGAGGugG--UGCCGga--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 42559 0.68 0.666175
Target:  5'- aGCCAGCaCUGCCGCguauaucucGGCCg-CAGCCUg -3'
miRNA:   3'- -CGGUCGaGGUGGUG---------CCGGagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 47634 0.68 0.680051
Target:  5'- cGCCAGCaucUCCAgCGCGuucGCCUCgGagcgggugaaacgccGCCCu -3'
miRNA:   3'- -CGGUCG---AGGUgGUGC---CGGAGgU---------------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 49493 0.66 0.753508
Target:  5'- gGCCGGCcauggccguugCCGCCGgGGCCgUCCcgGACgCg -3'
miRNA:   3'- -CGGUCGa----------GGUGGUgCCGG-AGG--UUGgG- -5'
2791 3' -59.5 NC_001491.2 + 50824 0.67 0.695818
Target:  5'- -aCGGCUCC--UACGGCCauuuUCgCGGCCCg -3'
miRNA:   3'- cgGUCGAGGugGUGCCGG----AG-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 51300 0.67 0.709509
Target:  5'- aGCaagcGCUCCGCCugaacgcccucugagGCGGCaacgCCGGCCUg -3'
miRNA:   3'- -CGgu--CGAGGUGG---------------UGCCGga--GGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.