miRNA display CGI


Results 21 - 40 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 54504 0.69 0.596444
Target:  5'- aGCCAGCUCUcuACUAUagaguaucuGCCUCCAGCagCCg -3'
miRNA:   3'- -CGGUCGAGG--UGGUGc--------CGGAGGUUG--GG- -5'
2791 3' -59.5 NC_001491.2 + 58403 0.67 0.722114
Target:  5'- aGCCGGCUCUacaucuGCCgcgccguugauuguACGGUCgaUCCAGgCCa -3'
miRNA:   3'- -CGGUCGAGG------UGG--------------UGCCGG--AGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 58694 0.67 0.705609
Target:  5'- uGCCAaaUCC-CC-CGGCCUCgCAgguaaACCCu -3'
miRNA:   3'- -CGGUcgAGGuGGuGCCGGAG-GU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 58941 0.68 0.636295
Target:  5'- aCCAGCUCCuggGCaGCCUCCAcGCuCCa -3'
miRNA:   3'- cGGUCGAGGuggUGcCGGAGGU-UG-GG- -5'
2791 3' -59.5 NC_001491.2 + 58988 0.66 0.787378
Target:  5'- cGCCGGCagCUACCGCuccggcgguuguuuGcGCCUCCAugUUu -3'
miRNA:   3'- -CGGUCGa-GGUGGUG--------------C-CGGAGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 59656 0.68 0.647265
Target:  5'- aGCCAGauucacgucaUCCACCGCacgcagaacacguucGCCUUCAACCUc -3'
miRNA:   3'- -CGGUCg---------AGGUGGUGc--------------CGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 59860 0.68 0.626319
Target:  5'- aGCCAcGCUUU-CCAaugcaucgaggcCGGCCUCgAACCCc -3'
miRNA:   3'- -CGGU-CGAGGuGGU------------GCCGGAGgUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 60664 0.66 0.772016
Target:  5'- cGCCGGCcCCGUCGuCGGUaUCCAcCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU-GCCGgAGGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 61260 0.66 0.771102
Target:  5'- aGCUAGUUCCuCCuugagauGCGGUaa-CAACCCa -3'
miRNA:   3'- -CGGUCGAGGuGG-------UGCCGgagGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 64017 0.78 0.188801
Target:  5'- cGCCGGCggcgCCGagaacgagcguucCCACGGCCUCCcccacuuuACCCa -3'
miRNA:   3'- -CGGUCGa---GGU-------------GGUGCCGGAGGu-------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 64104 0.69 0.606387
Target:  5'- gGCCGGCgauUACCAgcaGGCCgauggCUAGCCCc -3'
miRNA:   3'- -CGGUCGag-GUGGUg--CCGGa----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 67658 0.66 0.762817
Target:  5'- cCCAGCUauuuCC-CGGCCUggCAGCCCu -3'
miRNA:   3'- cGGUCGAggu-GGuGCCGGAg-GUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 68922 0.69 0.570727
Target:  5'- cGUCAGCUCCaacACCAgGGCggaUCCccugaagcugguugcGGCCCg -3'
miRNA:   3'- -CGGUCGAGG---UGGUgCCGg--AGG---------------UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 73992 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74056 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74120 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74184 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74248 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 78266 0.66 0.79005
Target:  5'- gGCCAGCUgCugUAUaGCC-CUcACCCg -3'
miRNA:   3'- -CGGUCGAgGugGUGcCGGaGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 78525 0.66 0.772016
Target:  5'- aCCAGCUCaGCCagGCGGgCUaccaCCAGCUCc -3'
miRNA:   3'- cGGUCGAGgUGG--UGCCgGA----GGUUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.