miRNA display CGI


Results 61 - 80 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 115478 0.72 0.418448
Target:  5'- -gCGGC-CCGCUgcaGCGGCCccCCGGCCCg -3'
miRNA:   3'- cgGUCGaGGUGG---UGCCGGa-GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115604 0.67 0.685977
Target:  5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3'
miRNA:   3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 115706 0.66 0.772016
Target:  5'- gGCCaccaGGCUCC-CCG-GGCC-CUggGACCCa -3'
miRNA:   3'- -CGG----UCGAGGuGGUgCCGGaGG--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115819 0.71 0.478906
Target:  5'- aGCCGGCggCCcaggccggaGCCuCGGCCUCCuucuccucguccGCCCg -3'
miRNA:   3'- -CGGUCGa-GG---------UGGuGCCGGAGGu-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115898 0.67 0.725006
Target:  5'- cCCGGCUCCuCCuCGGaCgaCCGugCCa -3'
miRNA:   3'- cGGUCGAGGuGGuGCC-GgaGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 115953 0.75 0.289538
Target:  5'- gGCCcGCUCC-CCucagGCGGCCgccuccCCGGCCCa -3'
miRNA:   3'- -CGGuCGAGGuGG----UGCCGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116165 0.73 0.384311
Target:  5'- uCCGGCUCCgcgGCCGCGgaggggaGCCUUCAgACCCu -3'
miRNA:   3'- cGGUCGAGG---UGGUGC-------CGGAGGU-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 116227 0.69 0.616347
Target:  5'- uGCUGGCcCCACCGacuCGGUC-CCAgcaGCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU---GCCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 116444 0.69 0.57664
Target:  5'- gGCCAgGCUCC-UCGgGGaCUCUGACCCu -3'
miRNA:   3'- -CGGU-CGAGGuGGUgCCgGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116534 0.66 0.781096
Target:  5'- cGCCuGC-CCucCCGaGGCgcugugCUCCAACCCg -3'
miRNA:   3'- -CGGuCGaGGu-GGUgCCG------GAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116724 0.67 0.685977
Target:  5'- gGCCccgacgcaaGGCUgCCgcgGCCGCGGCCgcUCCGgggaccagggcGCCCa -3'
miRNA:   3'- -CGG---------UCGA-GG---UGGUGCCGG--AGGU-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 116837 0.75 0.302946
Target:  5'- gGCCGGCUacccggcccaggCCGCCGCuGCCgcggCCAGCCa -3'
miRNA:   3'- -CGGUCGA------------GGUGGUGcCGGa---GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 117782 0.74 0.338537
Target:  5'- cGCCcGCUCCcaGCCGCccgggaggaGGCCUCCu-CCCu -3'
miRNA:   3'- -CGGuCGAGG--UGGUG---------CCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 117834 0.66 0.762817
Target:  5'- uGCC-GCUCCGgCGCcGCUUCC--CCCg -3'
miRNA:   3'- -CGGuCGAGGUgGUGcCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 117901 0.7 0.53753
Target:  5'- cGCCGGCUCUcCCG-GGCCguccUCCGgaggggaucGCCCg -3'
miRNA:   3'- -CGGUCGAGGuGGUgCCGG----AGGU---------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 118241 0.66 0.772016
Target:  5'- -aCGGUcgCCggGCCACGGgCUCCucaucACCCg -3'
miRNA:   3'- cgGUCGa-GG--UGGUGCCgGAGGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 118321 0.69 0.586527
Target:  5'- aGCCGGCgUC-CC-CGGCaC-CCAGCCCg -3'
miRNA:   3'- -CGGUCGaGGuGGuGCCG-GaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118362 0.72 0.444562
Target:  5'- cGCCGGCa--GCgGCGGuCCUCCuACCCc -3'
miRNA:   3'- -CGGUCGaggUGgUGCC-GGAGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118543 0.68 0.670146
Target:  5'- uCCGcGCagCCAgCGCGGCCgaagagggguucacCCAGCCCg -3'
miRNA:   3'- cGGU-CGa-GGUgGUGCCGGa-------------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 118634 0.72 0.409952
Target:  5'- aGCUAGCa-CGCCAUGGCCagCCAGCgCa -3'
miRNA:   3'- -CGGUCGagGUGGUGCCGGa-GGUUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.