miRNA display CGI


Results 81 - 100 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 118730 0.7 0.556987
Target:  5'- cGCC-GCggaaccCCGCCAcCGGCCacccgCCAACCUu -3'
miRNA:   3'- -CGGuCGa-----GGUGGU-GCCGGa----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 123108 0.67 0.695818
Target:  5'- cGCC-GCUCCGgagcgcguCCGCuGCCUCC-GCCg -3'
miRNA:   3'- -CGGuCGAGGU--------GGUGcCGGAGGuUGGg -5'
2791 3' -59.5 NC_001491.2 + 125190 0.7 0.508807
Target:  5'- cGCCGGCaccgaggucuUCCGCUGCGcgcucgcucgccGCCgcaaugCCAACCCg -3'
miRNA:   3'- -CGGUCG----------AGGUGGUGC------------CGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 125526 0.73 0.384311
Target:  5'- cGCCcGCUCgGuCCACGGCCgccgCCGcgacgccGCCCc -3'
miRNA:   3'- -CGGuCGAGgU-GGUGCCGGa---GGU-------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 137367 0.68 0.626319
Target:  5'- cGCCAcGCgCCGCCGCcugugccugcgGGCCugucgacgUCCGACUCg -3'
miRNA:   3'- -CGGU-CGaGGUGGUG-----------CCGG--------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 137623 0.71 0.471565
Target:  5'- -aCGGCcgCCGCCGCGGCagcggCCGcCCCg -3'
miRNA:   3'- cgGUCGa-GGUGGUGCCGga---GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 138458 0.66 0.772016
Target:  5'- ---cGCUCguCCGCGGguuCCUCCucGCCCu -3'
miRNA:   3'- cgguCGAGguGGUGCC---GGAGGu-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 138623 0.69 0.596444
Target:  5'- cCCAGCUUCAUCACGuaGCgCUCCGAUg- -3'
miRNA:   3'- cGGUCGAGGUGGUGC--CG-GAGGUUGgg -5'
2791 3' -59.5 NC_001491.2 + 139717 0.73 0.36913
Target:  5'- cGCCAcGCagCCGCCGCGGCgUaCCugcgcGCCCg -3'
miRNA:   3'- -CGGU-CGa-GGUGGUGCCGgA-GGu----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 140166 0.67 0.685977
Target:  5'- uGCCGcGCUCCgugggggacuuuGCCGCGGUCgugcgcgCCGugUCg -3'
miRNA:   3'- -CGGU-CGAGG------------UGGUGCCGGa------GGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 140995 0.68 0.666175
Target:  5'- cGCUAGCgCUGCCAaaaaGcGCCgcaagcgCCAACCCc -3'
miRNA:   3'- -CGGUCGaGGUGGUg---C-CGGa------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 141827 0.75 0.302946
Target:  5'- cCCAGCUCCggcgACCcCGGCCcagCCAugCCc -3'
miRNA:   3'- cGGUCGAGG----UGGuGCCGGa--GGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 141877 0.73 0.3536
Target:  5'- cCCAGCUCCggcgACCcCGGC--CCAGCCCa -3'
miRNA:   3'- cGGUCGAGG----UGGuGCCGgaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 143055 0.68 0.665182
Target:  5'- cGCCGGCcCCACCccaucgacguaacACGGCgC-CCcuCCCa -3'
miRNA:   3'- -CGGUCGaGGUGG-------------UGCCG-GaGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 144249 0.67 0.725006
Target:  5'- cGCCGGCUUCGaguaaguauccCCACcGCgCUUCGACCg -3'
miRNA:   3'- -CGGUCGAGGU-----------GGUGcCG-GAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 144306 0.73 0.385122
Target:  5'- cGCCgAGCUCCGCCGaGGCagaagCC-GCCCg -3'
miRNA:   3'- -CGG-UCGAGGUGGUgCCGga---GGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 144373 0.69 0.566792
Target:  5'- cGCgGGCg--GCCugGGCCUCUccCCCg -3'
miRNA:   3'- -CGgUCGaggUGGugCCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 144569 0.68 0.666175
Target:  5'- uGCUAGCUCCGgcuUCGgGGUCgagaaCCAACCg -3'
miRNA:   3'- -CGGUCGAGGU---GGUgCCGGa----GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 145516 0.67 0.725006
Target:  5'- uCCAGCgUCUugGCCAgauUGGCCUCgCGgacGCCCu -3'
miRNA:   3'- cGGUCG-AGG--UGGU---GCCGGAG-GU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 146390 0.69 0.566792
Target:  5'- cGgCAGCggCgGCCugGGCCggguagCCGGCCa -3'
miRNA:   3'- -CgGUCGa-GgUGGugCCGGa-----GGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.