Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2791 | 3' | -59.5 | NC_001491.2 | + | 146859 | 0.69 | 0.566792 |
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Target: 5'- aCCAGCggCGCCACGGuCCgggCCAccACCa -3' miRNA: 3'- cGGUCGagGUGGUGCC-GGa--GGU--UGGg -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 146977 | 0.72 | 0.444562 |
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Target: 5'- gGCCAGCagggaCACGGCCUCC--CCCa -3' miRNA: 3'- -CGGUCGaggugGUGCCGGAGGuuGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147060 | 0.67 | 0.705609 |
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Target: 5'- --aGGCUCCccuCCGCGGCCgCgGAgCCg -3' miRNA: 3'- cggUCGAGGu--GGUGCCGGaGgUUgGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147405 | 0.78 | 0.184698 |
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Target: 5'- gGCCgaGGCUCCgGCCugGGCCgCCGGCuCCa -3' miRNA: 3'- -CGG--UCGAGG-UGGugCCGGaGGUUG-GG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147774 | 0.71 | 0.499375 |
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Target: 5'- cGCCAGCUCC-CCgaagcGCGcGCCgucCCGGgCCg -3' miRNA: 3'- -CGGUCGAGGuGG-----UGC-CGGa--GGUUgGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147984 | 0.66 | 0.772016 |
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Target: 5'- -gCGGUUCC-CCAgGGCCgCCAGCa- -3' miRNA: 3'- cgGUCGAGGuGGUgCCGGaGGUUGgg -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 148673 | 0.73 | 0.36913 |
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Target: 5'- --aAGCUCCGagggcuCCACGGCC-CCAGCgCCg -3' miRNA: 3'- cggUCGAGGU------GGUGCCGGaGGUUG-GG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 148912 | 0.7 | 0.556987 |
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Target: 5'- aCCAGCUCCACaucgcCGGCCccgUCGAUCUc -3' miRNA: 3'- cGGUCGAGGUGgu---GCCGGa--GGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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