miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 116227 0.69 0.616347
Target:  5'- uGCUGGCcCCACCGacuCGGUC-CCAgcaGCCCu -3'
miRNA:   3'- -CGGUCGaGGUGGU---GCCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 116165 0.73 0.384311
Target:  5'- uCCGGCUCCgcgGCCGCGgaggggaGCCUUCAgACCCu -3'
miRNA:   3'- cGGUCGAGG---UGGUGC-------CGGAGGU-UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115953 0.75 0.289538
Target:  5'- gGCCcGCUCC-CCucagGCGGCCgccuccCCGGCCCa -3'
miRNA:   3'- -CGGuCGAGGuGG----UGCCGGa-----GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115898 0.67 0.725006
Target:  5'- cCCGGCUCCuCCuCGGaCgaCCGugCCa -3'
miRNA:   3'- cGGUCGAGGuGGuGCC-GgaGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 115819 0.71 0.478906
Target:  5'- aGCCGGCggCCcaggccggaGCCuCGGCCUCCuucuccucguccGCCCg -3'
miRNA:   3'- -CGGUCGa-GG---------UGGuGCCGGAGGu-----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 115706 0.66 0.772016
Target:  5'- gGCCaccaGGCUCC-CCG-GGCC-CUggGACCCa -3'
miRNA:   3'- -CGG----UCGAGGuGGUgCCGGaGG--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115604 0.67 0.685977
Target:  5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3'
miRNA:   3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5'
2791 3' -59.5 NC_001491.2 + 115478 0.72 0.418448
Target:  5'- -gCGGC-CCGCUgcaGCGGCCccCCGGCCCg -3'
miRNA:   3'- cgGUCGaGGUGG---UGCCGGa-GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115291 0.66 0.789161
Target:  5'- cGgCGGCUCuCGgCGCGaGCCccucuggUCCGACCUc -3'
miRNA:   3'- -CgGUCGAG-GUgGUGC-CGG-------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 115056 0.69 0.616347
Target:  5'- cGCaAGCUCCuggugcuggaCGCGGUCUCCAccgaggauugGCCCc -3'
miRNA:   3'- -CGgUCGAGGug--------GUGCCGGAGGU----------UGGG- -5'
2791 3' -59.5 NC_001491.2 + 111175 0.66 0.781096
Target:  5'- aGUCGGCgcagCGCCA-GGCUgagaagacgCCAGCCCa -3'
miRNA:   3'- -CGGUCGag--GUGGUgCCGGa--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 110799 0.68 0.626319
Target:  5'- -aCAGCUCCacgagcgaaGCCGCgGGCC-CCAgucGCCUg -3'
miRNA:   3'- cgGUCGAGG---------UGGUG-CCGGaGGU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 107101 0.75 0.302946
Target:  5'- gGCCAGUagcugaCCACCuuacagaaauGCGGCCaCCAGCCCc -3'
miRNA:   3'- -CGGUCGa-----GGUGG----------UGCCGGaGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 106054 0.66 0.744097
Target:  5'- aGCgCGGCggcaGCCGCGGCgaggCCAACCa -3'
miRNA:   3'- -CG-GUCGagg-UGGUGCCGga--GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 104794 0.69 0.586527
Target:  5'- uCCAGCUCCACguCGuCCaCCGACuCCa -3'
miRNA:   3'- cGGUCGAGGUGguGCcGGaGGUUG-GG- -5'
2791 3' -59.5 NC_001491.2 + 104648 0.71 0.466097
Target:  5'- cGCCAGCUCCuccacaaacggguagACCGgGGCgCUCguguACCCc -3'
miRNA:   3'- -CGGUCGAGG---------------UGGUgCCG-GAGgu--UGGG- -5'
2791 3' -59.5 NC_001491.2 + 104169 0.7 0.556987
Target:  5'- gGCCAuGCgCCugUAC-GCCUCCcgGACCCu -3'
miRNA:   3'- -CGGU-CGaGGugGUGcCGGAGG--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 101921 0.66 0.79005
Target:  5'- cGCCAGCgaaCC-CgACGGCaccgCCAGCUUu -3'
miRNA:   3'- -CGGUCGa--GGuGgUGCCGga--GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 101324 0.68 0.646269
Target:  5'- uUCAGCUCCGCCgcgucGCGGCUgguuaAACUCa -3'
miRNA:   3'- cGGUCGAGGUGG-----UGCCGGagg--UUGGG- -5'
2791 3' -59.5 NC_001491.2 + 94112 0.69 0.596444
Target:  5'- gGCCGGgUgCACC-CGGCCaaCGACCa -3'
miRNA:   3'- -CGGUCgAgGUGGuGCCGGagGUUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.