Results 61 - 80 of 108 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2791 | 3' | -59.5 | NC_001491.2 | + | 93608 | 0.72 | 0.401565 |
Target: 5'- gGCgAGCUCCACgcUGGCCguagCAACCCa -3' miRNA: 3'- -CGgUCGAGGUGguGCCGGag--GUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 89434 | 0.67 | 0.734594 |
Target: 5'- aGCCA-UUCCugUG-GGUCUCCGACCUc -3' miRNA: 3'- -CGGUcGAGGugGUgCCGGAGGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 89272 | 0.68 | 0.676093 |
Target: 5'- cGCCGaCUgCAgCUugGGCCUCC-ACUCg -3' miRNA: 3'- -CGGUcGAgGU-GGugCCGGAGGuUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 85833 | 0.68 | 0.636295 |
Target: 5'- gGCCAaguGUUCguCgCGCGcCCUCCGACCCc -3' miRNA: 3'- -CGGU---CGAGguG-GUGCcGGAGGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 85721 | 0.66 | 0.762817 |
Target: 5'- gGCCuGCgCCGCCACacgucucugggGGugucuCCUCCGGCCa -3' miRNA: 3'- -CGGuCGaGGUGGUG-----------CC-----GGAGGUUGGg -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 84695 | 0.67 | 0.685977 |
Target: 5'- gGCUAGCUCUAUgGCGGUCgCUAAgCUu -3' miRNA: 3'- -CGGUCGAGGUGgUGCCGGaGGUUgGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 81287 | 0.68 | 0.626319 |
Target: 5'- gGCCGGCaucagCUGCCcaaagauUGGCCUUgGGCCCu -3' miRNA: 3'- -CGGUCGa----GGUGGu------GCCGGAGgUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 80088 | 0.69 | 0.57664 |
Target: 5'- gGCCAuCUCCACCcaaggaaugGCGGCguagUCCAcCCCa -3' miRNA: 3'- -CGGUcGAGGUGG---------UGCCGg---AGGUuGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 78525 | 0.66 | 0.772016 |
Target: 5'- aCCAGCUCaGCCagGCGGgCUaccaCCAGCUCc -3' miRNA: 3'- cGGUCGAGgUGG--UGCCgGA----GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 78266 | 0.66 | 0.79005 |
Target: 5'- gGCCAGCUgCugUAUaGCC-CUcACCCg -3' miRNA: 3'- -CGGUCGAgGugGUGcCGGaGGuUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 74248 | 0.67 | 0.725006 |
Target: 5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3' miRNA: 3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 74184 | 0.67 | 0.725006 |
Target: 5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3' miRNA: 3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 74120 | 0.67 | 0.725006 |
Target: 5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3' miRNA: 3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 74056 | 0.67 | 0.725006 |
Target: 5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3' miRNA: 3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 73992 | 0.67 | 0.725006 |
Target: 5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3' miRNA: 3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 68922 | 0.69 | 0.570727 |
Target: 5'- cGUCAGCUCCaacACCAgGGCggaUCCccugaagcugguugcGGCCCg -3' miRNA: 3'- -CGGUCGAGG---UGGUgCCGg--AGG---------------UUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 67658 | 0.66 | 0.762817 |
Target: 5'- cCCAGCUauuuCC-CGGCCUggCAGCCCu -3' miRNA: 3'- cGGUCGAggu-GGuGCCGGAg-GUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 64104 | 0.69 | 0.606387 |
Target: 5'- gGCCGGCgauUACCAgcaGGCCgauggCUAGCCCc -3' miRNA: 3'- -CGGUCGag-GUGGUg--CCGGa----GGUUGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 64017 | 0.78 | 0.188801 |
Target: 5'- cGCCGGCggcgCCGagaacgagcguucCCACGGCCUCCcccacuuuACCCa -3' miRNA: 3'- -CGGUCGa---GGU-------------GGUGCCGGAGGu-------UGGG- -5' |
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2791 | 3' | -59.5 | NC_001491.2 | + | 61260 | 0.66 | 0.771102 |
Target: 5'- aGCUAGUUCCuCCuugagauGCGGUaa-CAACCCa -3' miRNA: 3'- -CGGUCGAGGuGG-------UGCCGgagGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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