Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position
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R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2791 | 3' | -59.5 | NC_001491.2 | + | 31306 | 0.68 | 0.636295 |
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Target: 5'- cGCCaacgAGCUaucaACCACGcuGCCUCCccGCCCg -3' miRNA: 3'- -CGG----UCGAgg--UGGUGC--CGGAGGu-UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 24285 | 0.7 | 0.554054 |
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Target: 5'- aCCGGCUCCcagaggggcugcauGCCauguaccuggGCGGCCUCCAaaGCUUu -3' miRNA: 3'- cGGUCGAGG--------------UGG----------UGCCGGAGGU--UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 19166 | 0.77 | 0.213591 |
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Target: 5'- aCCAGCUCCACgGCGGCCacgaUAGCaCCa -3' miRNA: 3'- cGGUCGAGGUGgUGCCGGag--GUUG-GG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 17941 | 0.67 | 0.725006 |
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Target: 5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3' miRNA: 3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 15485 | 0.69 | 0.606387 |
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Target: 5'- --gAGCUCCGCCGCGcgcGCCgugaugcuggUCCAuguuACCCg -3' miRNA: 3'- cggUCGAGGUGGUGC---CGG----------AGGU----UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 14905 | 0.67 | 0.733639 |
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Target: 5'- gGgCGGgUCCAUCAUGGCCUCgGucguuguACCg -3' miRNA: 3'- -CgGUCgAGGUGGUGCCGGAGgU-------UGGg -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 13422 | 0.69 | 0.596444 |
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Target: 5'- aCCAauauGCgaaUCGCCGCGGCCUUCAgaaACCUg -3' miRNA: 3'- cGGU----CGa--GGUGGUGCCGGAGGU---UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 5399 | 0.69 | 0.566792 |
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Target: 5'- cGCCAGCUCCAUaGCGGauguCUgcaggcgcguaaCCAGCUCa -3' miRNA: 3'- -CGGUCGAGGUGgUGCCg---GA------------GGUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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