miRNA display CGI


Results 41 - 60 of 108 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 3' -59.5 NC_001491.2 + 111175 0.66 0.781096
Target:  5'- aGUCGGCgcagCGCCA-GGCUgagaagacgCCAGCCCa -3'
miRNA:   3'- -CGGUCGag--GUGGUgCCGGa--------GGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 116534 0.66 0.781096
Target:  5'- cGCCuGC-CCucCCGaGGCgcugugCUCCAACCCg -3'
miRNA:   3'- -CGGuCGaGGu-GGUgCCG------GAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 58988 0.66 0.787378
Target:  5'- cGCCGGCagCUACCGCuccggcgguuguuuGcGCCUCCAugUUu -3'
miRNA:   3'- -CGGUCGa-GGUGGUG--------------C-CGGAGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 115291 0.66 0.789161
Target:  5'- cGgCGGCUCuCGgCGCGaGCCccucuggUCCGACCUc -3'
miRNA:   3'- -CgGUCGAG-GUgGUGC-CGG-------AGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 78266 0.66 0.79005
Target:  5'- gGCCAGCUgCugUAUaGCC-CUcACCCg -3'
miRNA:   3'- -CGGUCGAgGugGUGcCGGaGGuUGGG- -5'
2791 3' -59.5 NC_001491.2 + 85721 0.66 0.762817
Target:  5'- gGCCuGCgCCGCCACacgucucugggGGugucuCCUCCGGCCa -3'
miRNA:   3'- -CGGuCGaGGUGGUG-----------CC-----GGAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 117834 0.66 0.762817
Target:  5'- uGCC-GCUCCGgCGCcGCUUCC--CCCg -3'
miRNA:   3'- -CGGuCGAGGUgGUGcCGGAGGuuGGG- -5'
2791 3' -59.5 NC_001491.2 + 17941 0.67 0.725006
Target:  5'- gGCCAugUCCACCAUGcGUC-CCAGgCCg -3'
miRNA:   3'- -CGGUcgAGGUGGUGC-CGGaGGUUgGG- -5'
2791 3' -59.5 NC_001491.2 + 145516 0.67 0.725006
Target:  5'- uCCAGCgUCUugGCCAgauUGGCCUCgCGgacGCCCu -3'
miRNA:   3'- cGGUCG-AGG--UGGU---GCCGGAG-GU---UGGG- -5'
2791 3' -59.5 NC_001491.2 + 144249 0.67 0.725006
Target:  5'- cGCCGGCUUCGaguaaguauccCCACcGCgCUUCGACCg -3'
miRNA:   3'- -CGGUCGAGGU-----------GGUGcCG-GAGGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 115898 0.67 0.725006
Target:  5'- cCCGGCUCCuCCuCGGaCgaCCGugCCa -3'
miRNA:   3'- cGGUCGAGGuGGuGCC-GgaGGUugGG- -5'
2791 3' -59.5 NC_001491.2 + 74248 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74184 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74120 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 74056 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 73992 0.67 0.725006
Target:  5'- aGCCcucGCUcCCGCCGCGccGCCgCCGcagcaGCCCu -3'
miRNA:   3'- -CGGu--CGA-GGUGGUGC--CGGaGGU-----UGGG- -5'
2791 3' -59.5 NC_001491.2 + 14905 0.67 0.733639
Target:  5'- gGgCGGgUCCAUCAUGGCCUCgGucguuguACCg -3'
miRNA:   3'- -CgGUCgAGGUGGUGCCGGAGgU-------UGGg -5'
2791 3' -59.5 NC_001491.2 + 89434 0.67 0.734594
Target:  5'- aGCCA-UUCCugUG-GGUCUCCGACCUc -3'
miRNA:   3'- -CGGUcGAGGugGUgCCGGAGGUUGGG- -5'
2791 3' -59.5 NC_001491.2 + 106054 0.66 0.744097
Target:  5'- aGCgCGGCggcaGCCGCGGCgaggCCAACCa -3'
miRNA:   3'- -CG-GUCGagg-UGGUGCCGga--GGUUGGg -5'
2791 3' -59.5 NC_001491.2 + 49493 0.66 0.753508
Target:  5'- gGCCGGCcauggccguugCCGCCGgGGCCgUCCcgGACgCg -3'
miRNA:   3'- -CGGUCGa----------GGUGGUgCCGG-AGG--UUGgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.