Results 101 - 108 of 108 are showing below:
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| ID | Location | Perfect MFE.* | RefSeq Acc. |
strand
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Start Position | R_P_ratio# | P value |
| Predicted miRNA align pattern | |||||||
| 2791 | 3' | -59.5 | NC_001491.2 | + | 58694 | 0.67 | 0.705609 |
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Target: 5'- uGCCAaaUCC-CC-CGGCCUCgCAgguaaACCCu -3' miRNA: 3'- -CGGUcgAGGuGGuGCCGGAG-GU-----UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 147060 | 0.67 | 0.705609 |
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Target: 5'- --aGGCUCCccuCCGCGGCCgCgGAgCCg -3' miRNA: 3'- cggUCGAGGu--GGUGCCGGaGgUUgGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 123108 | 0.67 | 0.695818 |
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Target: 5'- cGCC-GCUCCGgagcgcguCCGCuGCCUCC-GCCg -3' miRNA: 3'- -CGGuCGAGGU--------GGUGcCGGAGGuUGGg -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 50824 | 0.67 | 0.695818 |
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Target: 5'- -aCGGCUCC--UACGGCCauuuUCgCGGCCCg -3' miRNA: 3'- cgGUCGAGGugGUGCCGG----AG-GUUGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 84695 | 0.67 | 0.685977 |
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Target: 5'- gGCUAGCUCUAUgGCGGUCgCUAAgCUu -3' miRNA: 3'- -CGGUCGAGGUGgUGCCGGaGGUUgGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 115604 | 0.67 | 0.685977 |
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Target: 5'- cCCAGCgacgcggCUugCGCGGCCUaCUGuCCCc -3' miRNA: 3'- cGGUCGa------GGugGUGCCGGA-GGUuGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 116724 | 0.67 | 0.685977 |
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Target: 5'- gGCCccgacgcaaGGCUgCCgcgGCCGCGGCCgcUCCGgggaccagggcGCCCa -3' miRNA: 3'- -CGG---------UCGA-GG---UGGUGCCGG--AGGU-----------UGGG- -5' |
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| 2791 | 3' | -59.5 | NC_001491.2 | + | 81287 | 0.68 | 0.626319 |
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Target: 5'- gGCCGGCaucagCUGCCcaaagauUGGCCUUgGGCCCu -3' miRNA: 3'- -CGGUCGa----GGUGGu------GCCGGAGgUUGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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