miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2791 5' -50 NC_001491.2 + 17172 0.66 0.995886
Target:  5'- cGGAGGuCUGUagaUGGaauccgaCAUAgcgACAGUUUAu -3'
miRNA:   3'- -CCUCC-GACA---ACCg------GUGUa--UGUCAAAU- -5'
2791 5' -50 NC_001491.2 + 131492 0.66 0.994367
Target:  5'- cGGGGGCg---GGUUaACAUACAGUa-- -3'
miRNA:   3'- -CCUCCGacaaCCGG-UGUAUGUCAaau -5'
2791 5' -50 NC_001491.2 + 146173 0.66 0.993453
Target:  5'- uGGGGCaggggGUUGGCCACGcuccCGGUg-- -3'
miRNA:   3'- cCUCCGa----CAACCGGUGUau--GUCAaau -5'
2791 5' -50 NC_001491.2 + 131117 0.67 0.991271
Target:  5'- gGGuGcGCUGUUGGCC-CGgacACGGUa-- -3'
miRNA:   3'- -CCuC-CGACAACCGGuGUa--UGUCAaau -5'
2791 5' -50 NC_001491.2 + 54986 0.67 0.989983
Target:  5'- cGGAGGUUGcUGGCCucGCAggAUucgGGUUUGg -3'
miRNA:   3'- -CCUCCGACaACCGG--UGUa-UG---UCAAAU- -5'
2791 5' -50 NC_001491.2 + 101697 0.67 0.985214
Target:  5'- uGGAGGCcGUgguggagcUGGCCAgGUGCAc---- -3'
miRNA:   3'- -CCUCCGaCA--------ACCGGUgUAUGUcaaau -5'
2791 5' -50 NC_001491.2 + 48374 0.68 0.981182
Target:  5'- aGGGGGUUGacUGGCCGCuGUugGGg--- -3'
miRNA:   3'- -CCUCCGACa-ACCGGUG-UAugUCaaau -5'
2791 5' -50 NC_001491.2 + 13923 0.68 0.973666
Target:  5'- cGGGGCUGgcGGCCuuggGCGGUg-- -3'
miRNA:   3'- cCUCCGACaaCCGGuguaUGUCAaau -5'
2791 5' -50 NC_001491.2 + 105627 0.69 0.964181
Target:  5'- cGGAGGCgucgGUuaUGGCagcgguggaACAUACGGUa-- -3'
miRNA:   3'- -CCUCCGa---CA--ACCGg--------UGUAUGUCAaau -5'
2791 5' -50 NC_001491.2 + 98476 0.72 0.889653
Target:  5'- gGGuGGGgUGUUGGCCACGUGCc----- -3'
miRNA:   3'- -CC-UCCgACAACCGGUGUAUGucaaau -5'
2791 5' -50 NC_001491.2 + 133238 0.73 0.845711
Target:  5'- uGGAGGCacgaucugaaagcauUGUUGGCUACAcGCGGg--- -3'
miRNA:   3'- -CCUCCG---------------ACAACCGGUGUaUGUCaaau -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.