miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27920 3' -55.9 NC_005886.2 + 18597 0.66 0.638488
Target:  5'- -gUCGCuACGCUgcucGCCGGUcUGCugCa -3'
miRNA:   3'- ggAGCGuUGCGGa---CGGCCA-AUGugGa -5'
27920 3' -55.9 NC_005886.2 + 39359 0.66 0.638488
Target:  5'- gUCgCGCAACGUCgcgGCUuccGUUGCACCa -3'
miRNA:   3'- -GGaGCGUUGCGGa--CGGc--CAAUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 13441 0.66 0.616395
Target:  5'- gCUCGCAACGCUgcaaGCCGug-ACGgCUg -3'
miRNA:   3'- gGAGCGUUGCGGa---CGGCcaaUGUgGA- -5'
27920 3' -55.9 NC_005886.2 + 38526 0.66 0.616395
Target:  5'- --gUGCGGCGCg-GCCGGcaACACCa -3'
miRNA:   3'- ggaGCGUUGCGgaCGGCCaaUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 18281 0.66 0.616395
Target:  5'- gCUUGCgAACGUCUGCCGcauccauCGCCUu -3'
miRNA:   3'- gGAGCG-UUGCGGACGGCcaau---GUGGA- -5'
27920 3' -55.9 NC_005886.2 + 44120 0.67 0.594357
Target:  5'- aCUUGCugcggAACGCCgGCCGcUUGCAUCg -3'
miRNA:   3'- gGAGCG-----UUGCGGaCGGCcAAUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 43939 0.67 0.594357
Target:  5'- aCCggGCuucACGUCUGCCGGgca-ACCUg -3'
miRNA:   3'- -GGagCGu--UGCGGACGGCCaaugUGGA- -5'
27920 3' -55.9 NC_005886.2 + 22895 0.68 0.529281
Target:  5'- aCUCggGCGAUaGCgUGCCGGUgcuCACCg -3'
miRNA:   3'- gGAG--CGUUG-CGgACGGCCAau-GUGGa -5'
27920 3' -55.9 NC_005886.2 + 9674 0.69 0.447089
Target:  5'- aCCU-GCGAUGCCUGCUGcUUGCuCCg -3'
miRNA:   3'- -GGAgCGUUGCGGACGGCcAAUGuGGa -5'
27920 3' -55.9 NC_005886.2 + 40853 0.72 0.330361
Target:  5'- gCCaUCGCGACGCCUuCCccUUGCACCUc -3'
miRNA:   3'- -GG-AGCGUUGCGGAcGGccAAUGUGGA- -5'
27920 3' -55.9 NC_005886.2 + 41881 0.74 0.219645
Target:  5'- -gUCGCAAUGCCUgcGCCGG--ACGCCg -3'
miRNA:   3'- ggAGCGUUGCGGA--CGGCCaaUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 43955 0.75 0.213898
Target:  5'- gCCggugCGCccAUGCCUGCCGGU-GCGCCc -3'
miRNA:   3'- -GGa---GCGu-UGCGGACGGCCAaUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 43919 0.75 0.213898
Target:  5'- gCCggugCGCccAUGCCUGCCGGU-GCGCCc -3'
miRNA:   3'- -GGa---GCGu-UGCGGACGGCCAaUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 43991 0.75 0.20828
Target:  5'- cCCggugCGCccAUGCCUGCCGGU-GCGCCc -3'
miRNA:   3'- -GGa---GCGu-UGCGGACGGCCAaUGUGGa -5'
27920 3' -55.9 NC_005886.2 + 16187 0.76 0.172432
Target:  5'- cCCUUGUAuuguacCGCCUGCCGGguuacGCGCCg -3'
miRNA:   3'- -GGAGCGUu-----GCGGACGGCCaa---UGUGGa -5'
27920 3' -55.9 NC_005886.2 + 2085 1.09 0.000709
Target:  5'- aCCUCGCAACGCCUGCCGGUUACACCUc -3'
miRNA:   3'- -GGAGCGUUGCGGACGGCCAAUGUGGA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.