miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27920 5' -53.2 NC_005886.2 + 2051 1.1 0.001035
Target:  5'- uGAAAUCGUAUCCCGGCAACGCCGCACa -3'
miRNA:   3'- -CUUUAGCAUAGGGCCGUUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 2148 0.68 0.633912
Target:  5'- aAAGUUGU-UgCCGGCGugGuuGCGCu -3'
miRNA:   3'- cUUUAGCAuAgGGCCGUugCggCGUG- -5'
27920 5' -53.2 NC_005886.2 + 8132 0.74 0.336918
Target:  5'- -cGAUCGUuaccuGUUCCGGCGGCGaaCCGUACg -3'
miRNA:   3'- cuUUAGCA-----UAGGGCCGUUGC--GGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 12997 0.71 0.448362
Target:  5'- cGAAAUUGUuguuaCCGGCAACGCUuGCAa -3'
miRNA:   3'- -CUUUAGCAuag--GGCCGUUGCGG-CGUg -5'
27920 5' -53.2 NC_005886.2 + 13030 0.67 0.698206
Target:  5'- ----gCGUAUCcaccgggcuuacaaCCGGCGAUGCUGCGa -3'
miRNA:   3'- cuuuaGCAUAG--------------GGCCGUUGCGGCGUg -5'
27920 5' -53.2 NC_005886.2 + 14538 0.68 0.656585
Target:  5'- -cGAUCGgaa-CCGGCGACG-CGUACg -3'
miRNA:   3'- cuUUAGCauagGGCCGUUGCgGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 15037 0.66 0.752848
Target:  5'- -cAAUCGUcggucggaugaaugAUCgCgCGGgGAUGCCGCGCg -3'
miRNA:   3'- cuUUAGCA--------------UAG-G-GCCgUUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 16268 0.67 0.723647
Target:  5'- cGGcgCGUAaCCCGGCAG-GCgGUACa -3'
miRNA:   3'- cUUuaGCAUaGGGCCGUUgCGgCGUG- -5'
27920 5' -53.2 NC_005886.2 + 17471 0.72 0.408933
Target:  5'- --cGUCGaaccgCCCGGCAGUGCUGCACc -3'
miRNA:   3'- cuuUAGCaua--GGGCCGUUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 23401 0.72 0.438306
Target:  5'- cGGAUCGUAUUCCaGCuucucAACGaCCGCGCg -3'
miRNA:   3'- cUUUAGCAUAGGGcCG-----UUGC-GGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 23790 0.68 0.667891
Target:  5'- aGggGUCGaacAUCUaCGGCAcaACGuuGCGCa -3'
miRNA:   3'- -CuuUAGCa--UAGG-GCCGU--UGCggCGUG- -5'
27920 5' -53.2 NC_005886.2 + 24449 0.67 0.723647
Target:  5'- cGAGcgCG----CCGGCcaguGACGCCGCGCa -3'
miRNA:   3'- -CUUuaGCauagGGCCG----UUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 36964 0.69 0.611232
Target:  5'- ----aCGUAUCCCGaaagaccuGC-GCGCCGCAg -3'
miRNA:   3'- cuuuaGCAUAGGGC--------CGuUGCGGCGUg -5'
27920 5' -53.2 NC_005886.2 + 37964 0.71 0.46885
Target:  5'- gGAAAUacCGUAgauuUCCCGGCggUGgUGCACg -3'
miRNA:   3'- -CUUUA--GCAU----AGGGCCGuuGCgGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 38606 0.76 0.253721
Target:  5'- cGAAUCGUugcuugguguUgCCGGCcGCGCCGCACu -3'
miRNA:   3'- cUUUAGCAu---------AgGGCCGuUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 38724 0.76 0.259842
Target:  5'- cAGAUCGUcgaccauGUUgCGGUAACGCUGCACa -3'
miRNA:   3'- cUUUAGCA-------UAGgGCCGUUGCGGCGUG- -5'
27920 5' -53.2 NC_005886.2 + 38902 0.68 0.656585
Target:  5'- cGGAUaCGUccgCUCGGCGAcCGCUGCGCu -3'
miRNA:   3'- cUUUA-GCAua-GGGCCGUU-GCGGCGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.