miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27921 3' -54.4 NC_005886.2 + 33732 0.65 0.744189
Target:  5'- aAGACgGGCGGUAUGUgugCGUGGGUguuacgaUGCg -3'
miRNA:   3'- cUCUG-CUGUCGUGCGa--GCGCUCA-------ACG- -5'
27921 3' -54.4 NC_005886.2 + 13628 0.66 0.712955
Target:  5'- --uGCGAacgAGCGCGC-CGCGAucugcuGUUGCg -3'
miRNA:   3'- cucUGCUg--UCGUGCGaGCGCU------CAACG- -5'
27921 3' -54.4 NC_005886.2 + 346 0.66 0.712955
Target:  5'- aAGAauCGACGGCgACGgUUGCGGgcacuGUUGCa -3'
miRNA:   3'- cUCU--GCUGUCG-UGCgAGCGCU-----CAACG- -5'
27921 3' -54.4 NC_005886.2 + 39449 0.66 0.706397
Target:  5'- cAGGCG-Cu-CGCGCUuggugcaacggaagcCGCGAGUUGCg -3'
miRNA:   3'- cUCUGCuGucGUGCGA---------------GCGCUCAACG- -5'
27921 3' -54.4 NC_005886.2 + 13352 0.66 0.690993
Target:  5'- -cGGCGGCAaCGuCGCUCGCGGauGUaGCg -3'
miRNA:   3'- cuCUGCUGUcGU-GCGAGCGCU--CAaCG- -5'
27921 3' -54.4 NC_005886.2 + 46885 0.66 0.690993
Target:  5'- cGAGugcgcCGGCaAGCaugcguucgacuGCGCUUGCcGGGUUGCg -3'
miRNA:   3'- -CUCu----GCUG-UCG------------UGCGAGCG-CUCAACG- -5'
27921 3' -54.4 NC_005886.2 + 36266 0.67 0.646456
Target:  5'- -cGGCGGCGGCACGggCGgcaCGGGcgGCa -3'
miRNA:   3'- cuCUGCUGUCGUGCgaGC---GCUCaaCG- -5'
27921 3' -54.4 NC_005886.2 + 36218 0.67 0.646456
Target:  5'- -cGGCGGCGGCACGggCGgcaCGGGcgGCa -3'
miRNA:   3'- cuCUGCUGUCGUGCgaGC---GCUCaaCG- -5'
27921 3' -54.4 NC_005886.2 + 26525 0.68 0.617345
Target:  5'- aGGACGuACAGCaaccacauccgugccGCGCUCGUGAaucGUcGCg -3'
miRNA:   3'- cUCUGC-UGUCG---------------UGCGAGCGCU---CAaCG- -5'
27921 3' -54.4 NC_005886.2 + 16153 0.68 0.590549
Target:  5'- --cACGucuACAGCACGCUUGCGAaUUcGCa -3'
miRNA:   3'- cucUGC---UGUCGUGCGAGCGCUcAA-CG- -5'
27921 3' -54.4 NC_005886.2 + 19352 0.68 0.589436
Target:  5'- cGGACGAUAGCcCGUuucuucgcaggucUCGCGAcgUGCa -3'
miRNA:   3'- cUCUGCUGUCGuGCG-------------AGCGCUcaACG- -5'
27921 3' -54.4 NC_005886.2 + 24518 0.69 0.557361
Target:  5'- -cGGCGucacuggcCGGCGCGCUCGCGc--UGCa -3'
miRNA:   3'- cuCUGCu-------GUCGUGCGAGCGCucaACG- -5'
27921 3' -54.4 NC_005886.2 + 5821 0.73 0.323832
Target:  5'- -cGACGACAGCcgagcCGCUCGCGgacaauuGGaUUGCa -3'
miRNA:   3'- cuCUGCUGUCGu----GCGAGCGC-------UC-AACG- -5'
27921 3' -54.4 NC_005886.2 + 6147 1.13 0.000564
Target:  5'- aGAGACGACAGCACGCUCGCGAGUUGCg -3'
miRNA:   3'- -CUCUGCUGUCGUGCGAGCGCUCAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.