miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27921 5' -49.7 NC_005886.2 + 25790 0.66 0.913884
Target:  5'- -cGCAUCGCggcCGCGugucGGCGcguuUGGUGAAUc -3'
miRNA:   3'- aaCGUAGCGa--GCGC----UUGU----ACUACUUG- -5'
27921 5' -49.7 NC_005886.2 + 40347 0.66 0.913884
Target:  5'- ---gAUCGUUgGUG-ACGUGGUGAACa -3'
miRNA:   3'- aacgUAGCGAgCGCuUGUACUACUUG- -5'
27921 5' -49.7 NC_005886.2 + 44621 0.66 0.913884
Target:  5'- aUUGCGUCGUUCGCuucuuUGAgucGAACg -3'
miRNA:   3'- -AACGUAGCGAGCGcuuguACUa--CUUG- -5'
27921 5' -49.7 NC_005886.2 + 26028 0.66 0.906954
Target:  5'- -gGCGUuaCGCU-GCGGGCGUGAUGucACc -3'
miRNA:   3'- aaCGUA--GCGAgCGCUUGUACUACu-UG- -5'
27921 5' -49.7 NC_005886.2 + 25846 0.66 0.892161
Target:  5'- -cGCGUCGaauucaagccCGCGAAUGUGAucgaUGAACa -3'
miRNA:   3'- aaCGUAGCga--------GCGCUUGUACU----ACUUG- -5'
27921 5' -49.7 NC_005886.2 + 39171 0.67 0.867715
Target:  5'- -cGCGUUGCUgaaCGCacAACAUGcgGAGCg -3'
miRNA:   3'- aaCGUAGCGA---GCGc-UUGUACuaCUUG- -5'
27921 5' -49.7 NC_005886.2 + 6900 0.67 0.858993
Target:  5'- -aGCGuUCGCaUCGCGcucGACAuUGAUGAAUu -3'
miRNA:   3'- aaCGU-AGCG-AGCGC---UUGU-ACUACUUG- -5'
27921 5' -49.7 NC_005886.2 + 9612 0.68 0.840742
Target:  5'- -cGCGggucauUCGCUUGCGcaaucAACGcuUGAUGAACa -3'
miRNA:   3'- aaCGU------AGCGAGCGC-----UUGU--ACUACUUG- -5'
27921 5' -49.7 NC_005886.2 + 38281 0.69 0.769559
Target:  5'- gUGCGaaccgaCGUgCGCGGGCGUGAUGAGa -3'
miRNA:   3'- aACGUa-----GCGaGCGCUUGUACUACUUg -5'
27921 5' -49.7 NC_005886.2 + 38964 0.69 0.758631
Target:  5'- -cGCAUCGaagcgauggCGCGAGC--GAUGAACg -3'
miRNA:   3'- aaCGUAGCga-------GCGCUUGuaCUACUUG- -5'
27921 5' -49.7 NC_005886.2 + 13348 0.69 0.747555
Target:  5'- -gGCAacgUCGCUCGCGGAUGUagcGAGCg -3'
miRNA:   3'- aaCGU---AGCGAGCGCUUGUAcuaCUUG- -5'
27921 5' -49.7 NC_005886.2 + 32657 0.69 0.747555
Target:  5'- gUUGCGUCGCUCGUu-ACGgucacaGUGAACa -3'
miRNA:   3'- -AACGUAGCGAGCGcuUGUac----UACUUG- -5'
27921 5' -49.7 NC_005886.2 + 44087 0.71 0.631696
Target:  5'- -gGUAUUGCUC-CGGGCAUGAUGccGACc -3'
miRNA:   3'- aaCGUAGCGAGcGCUUGUACUAC--UUG- -5'
27921 5' -49.7 NC_005886.2 + 21765 0.74 0.49325
Target:  5'- -cGCAUCGCaUCGCGcGGCAUcuGUGAACa -3'
miRNA:   3'- aaCGUAGCG-AGCGC-UUGUAc-UACUUG- -5'
27921 5' -49.7 NC_005886.2 + 6113 1.07 0.003524
Target:  5'- cUUGCAUCGCUCGCGAACAUGAUGAACc -3'
miRNA:   3'- -AACGUAGCGAGCGCUUGUACUACUUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.