Results 1 - 20 of 32 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
27922 | 5' | -45.4 | NC_005886.2 | + | 7645 | 1.11 | 0.006264 |
Target: 5'- aAGCCGCUGCAAAACGAAAAUAUACCGa -3' miRNA: 3'- -UCGGCGACGUUUUGCUUUUAUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 8111 | 0.77 | 0.653747 |
Target: 5'- -uCCGCUGCAAAACGAAuguucgAUugCGa -3' miRNA: 3'- ucGGCGACGUUUUGCUUuua---UAugGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 29271 | 0.77 | 0.665729 |
Target: 5'- aAGCCGCUGCGcguGCGG--GUAaGCCGa -3' miRNA: 3'- -UCGGCGACGUuu-UGCUuuUAUaUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 47270 | 0.74 | 0.781101 |
Target: 5'- -cCCGUUGCc-GACGAAGGUGUGCCc -3' miRNA: 3'- ucGGCGACGuuUUGCUUUUAUAUGGc -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 24310 | 0.73 | 0.831842 |
Target: 5'- cAGCCGCcGCGAAAUucgggcgGAAGAUGUugCa -3' miRNA: 3'- -UCGGCGaCGUUUUG-------CUUUUAUAugGc -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 19232 | 0.73 | 0.84246 |
Target: 5'- cGGCCGUUGCAGAugG----UAUugCGa -3' miRNA: 3'- -UCGGCGACGUUUugCuuuuAUAugGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 29998 | 0.72 | 0.886502 |
Target: 5'- cGuCCGCUGCGuuACGGAuggAUGCUGc -3' miRNA: 3'- uC-GGCGACGUuuUGCUUuuaUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 20501 | 0.71 | 0.909283 |
Target: 5'- cGCCGCUGCAcguuAGCGAGucgAUAgCa -3' miRNA: 3'- uCGGCGACGUu---UUGCUUuuaUAUgGc -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 19268 | 0.7 | 0.940741 |
Target: 5'- cGCCGCUGCAucGCGA--AUGUcUCa -3' miRNA: 3'- uCGGCGACGUuuUGCUuuUAUAuGGc -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 45474 | 0.7 | 0.955701 |
Target: 5'- aAGCCGCagcgGCAAAgaaggccgGCGAuAAcgAUGCCGc -3' miRNA: 3'- -UCGGCGa---CGUUU--------UGCU-UUuaUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 47160 | 0.69 | 0.960056 |
Target: 5'- uGUCGCUGCAcaacACGGAAA---ACCGa -3' miRNA: 3'- uCGGCGACGUuu--UGCUUUUauaUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 43290 | 0.69 | 0.960056 |
Target: 5'- aAGCCGCUcgucacGCAGGACGgcAA---ACCGa -3' miRNA: 3'- -UCGGCGA------CGUUUUGCuuUUauaUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 10441 | 0.69 | 0.962923 |
Target: 5'- uGCCGCUGCuuccgcuuguugccGCGuGAcgAUGCCGa -3' miRNA: 3'- uCGGCGACGuuu-----------UGCuUUuaUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 38712 | 0.69 | 0.964107 |
Target: 5'- cAGCCGCUGUuucAGAucguCGAccAUGUugCGg -3' miRNA: 3'- -UCGGCGACG---UUUu---GCUuuUAUAugGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 12587 | 0.69 | 0.971328 |
Target: 5'- cGCCGUcuUGaUAGAACGAAAGauucGUACCGu -3' miRNA: 3'- uCGGCG--AC-GUUUUGCUUUUa---UAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 47262 | 0.69 | 0.971328 |
Target: 5'- uGCCGCUG----GCGAAcagguUAUGCCGa -3' miRNA: 3'- uCGGCGACguuuUGCUUuu---AUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 13298 | 0.68 | 0.974518 |
Target: 5'- uGCCGCcG-AAAACGAAAugcccgAUACCGu -3' miRNA: 3'- uCGGCGaCgUUUUGCUUUua----UAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 46203 | 0.68 | 0.974518 |
Target: 5'- cGGCaagaaaGUUGCAGacaguGACGGAucUGUGCCGa -3' miRNA: 3'- -UCGg-----CGACGUU-----UUGCUUuuAUAUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 29298 | 0.68 | 0.977442 |
Target: 5'- cGGCCGCUGC-AAACGc------GCCGu -3' miRNA: 3'- -UCGGCGACGuUUUGCuuuuauaUGGC- -5' |
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27922 | 5' | -45.4 | NC_005886.2 | + | 32530 | 0.68 | 0.983442 |
Target: 5'- cGGCCGCUGCAAAcccugcauGCGcugcacgcACCGc -3' miRNA: 3'- -UCGGCGACGUUU--------UGCuuuuaua-UGGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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