miRNA: 3'- -GCGCGCuaguAAGUAgGCUGGCUGCU- -5'
miRNA: 3'- gCGCGC---UAGUaaGUAGGCUGGCUGCu -5'
miRNA: 3'- gCGCGCU-----AGUAAGUa----GGCUGGCUGcu -5'
miRNA: 3'- gcGCGCUAGUAAGU---------AGGCUGGCUGCu -5'
miRNA: 3'- -GCGCGCUAGUAAGUAGGCUGGCUGCU- -5'
Results 21 - 25 of 25 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 27927 | 5' | -53 | NC_005886.2 | + | 16808 | 0.73 | 0.454772 |
|
Target: 5'- uCGCGCGcuu-UUCAU-CGGCCGACGAc -3' miRNA: 3'- -GCGCGCuaguAAGUAgGCUGGCUGCU- -5' |
|||||||
| 27927 | 5' | -53 | NC_005886.2 | + | 716 | 0.73 | 0.444815 |
|
Target: 5'- gGCGCGuauGUCAcgCAUUCGAUCGACGc -3' miRNA: 3'- gCGCGC---UAGUaaGUAGGCUGGCUGCu -5' |
|||||||
| 27927 | 5' | -53 | NC_005886.2 | + | 42036 | 0.74 | 0.378749 |
|
Target: 5'- gGCGCGAacacuUCGUUCAgcgugUCGGCCGGCa- -3' miRNA: 3'- gCGCGCU-----AGUAAGUa----GGCUGGCUGcu -5' |
|||||||
| 27927 | 5' | -53 | NC_005886.2 | + | 46956 | 0.74 | 0.378749 |
|
Target: 5'- -aUGCGAUCAUUCGcauugccgaUCUGGCCGGCGc -3' miRNA: 3'- gcGCGCUAGUAAGU---------AGGCUGGCUGCu -5' |
|||||||
| 27927 | 5' | -53 | NC_005886.2 | + | 15113 | 1.09 | 0.0016 |
|
Target: 5'- cCGCGCGAUCAUUCAUCCGACCGACGAu -3' miRNA: 3'- -GCGCGCUAGUAAGUAGGCUGGCUGCU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home