miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27928 5' -55.2 NC_005886.2 + 13440 0.66 0.704147
Target:  5'- -cUCGCAACgCUgcaaGCCGUgAcGGCUGGUGc -3'
miRNA:   3'- caAGCGUUG-GA----UGGCAgU-CUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 42521 0.66 0.682284
Target:  5'- cGUUUGCggUCUACuCGaUCAcAUCGGCGu -3'
miRNA:   3'- -CAAGCGuuGGAUG-GC-AGUcUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 2717 0.66 0.682284
Target:  5'- --gCGCGGCCgGCgUGUCAGuugcaGCCGGUGu -3'
miRNA:   3'- caaGCGUUGGaUG-GCAGUC-----UGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 13406 0.66 0.671274
Target:  5'- cUUCGCAccACCauagAUCGcaacCGGACCGGCu -3'
miRNA:   3'- cAAGCGU--UGGa---UGGCa---GUCUGGCCGc -5'
27928 5' -55.2 NC_005886.2 + 22659 0.67 0.649152
Target:  5'- cGUUCGCAcg--GCaGUCGGACgGGCGu -3'
miRNA:   3'- -CAAGCGUuggaUGgCAGUCUGgCCGC- -5'
27928 5' -55.2 NC_005886.2 + 29844 0.67 0.615875
Target:  5'- --cCGCAACCUACCGaccUCGGGggcuaUGGCu -3'
miRNA:   3'- caaGCGUUGGAUGGC---AGUCUg----GCCGc -5'
27928 5' -55.2 NC_005886.2 + 29634 0.67 0.593746
Target:  5'- uUUCGUGACCUucacacGCuCGaUCAG-CCGGCGu -3'
miRNA:   3'- cAAGCGUUGGA------UG-GC-AGUCuGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 21318 0.68 0.560821
Target:  5'- -cUCGCGaugACCaaaCGUCAGACCGuGCu -3'
miRNA:   3'- caAGCGU---UGGaugGCAGUCUGGC-CGc -5'
27928 5' -55.2 NC_005886.2 + 44126 0.68 0.549951
Target:  5'- -gUUGCAACUUGCUG-CGGaacGCCGGCc -3'
miRNA:   3'- caAGCGUUGGAUGGCaGUC---UGGCCGc -5'
27928 5' -55.2 NC_005886.2 + 18224 0.68 0.539148
Target:  5'- --aUGCGuCUUGCaCGgguugCAGACCGGCGa -3'
miRNA:   3'- caaGCGUuGGAUG-GCa----GUCUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 23402 0.69 0.516706
Target:  5'- aUUCGCAuggaacugcaccaGCCgcucuacaaACCGUCGacGACCGGCa -3'
miRNA:   3'- cAAGCGU-------------UGGa--------UGGCAGU--CUGGCCGc -5'
27928 5' -55.2 NC_005886.2 + 46964 0.71 0.407495
Target:  5'- aUUCGCA--UUGCCGaUCuGGCCGGCGc -3'
miRNA:   3'- cAAGCGUugGAUGGC-AGuCUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 41263 0.71 0.380049
Target:  5'- aGUUCGUcgUCgcacACUGUCAGcACCGGCGc -3'
miRNA:   3'- -CAAGCGuuGGa---UGGCAGUC-UGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 18513 0.71 0.380049
Target:  5'- cUUCGCGAaUUGCag-CAGACCGGCGa -3'
miRNA:   3'- cAAGCGUUgGAUGgcaGUCUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 11610 0.71 0.37118
Target:  5'- cUUCGCGugCaACCGUC--GCCGGCa -3'
miRNA:   3'- cAAGCGUugGaUGGCAGucUGGCCGc -5'
27928 5' -55.2 NC_005886.2 + 38905 0.72 0.345429
Target:  5'- -aUCGCuucgauGCgCUGCCGUCGucGAUCGGCGc -3'
miRNA:   3'- caAGCGu-----UG-GAUGGCAGU--CUGGCCGC- -5'
27928 5' -55.2 NC_005886.2 + 16290 1.08 0.001016
Target:  5'- cGUUCGCAACCUACCGUCAGACCGGCGc -3'
miRNA:   3'- -CAAGCGUUGGAUGGCAGUCUGGCCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.