miRNA display CGI


Results 1 - 7 of 7 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27929 3' -52.6 NC_005886.2 + 17781 0.66 0.845221
Target:  5'- aGGCgca---GGCGGUaCGGG-CGUGCu -3'
miRNA:   3'- -CCGauauugCUGCCGaGCCCaGCAUG- -5'
27929 3' -52.6 NC_005886.2 + 36191 0.66 0.836284
Target:  5'- cGGCaucGGCGGCGGCaCGGGcggcaUCGgcgGCg -3'
miRNA:   3'- -CCGauaUUGCUGCCGaGCCC-----AGCa--UG- -5'
27929 3' -52.6 NC_005886.2 + 26287 0.67 0.778319
Target:  5'- uGCUGc-ACGAUGcGCUCGauucugucgaGGUCGUGCu -3'
miRNA:   3'- cCGAUauUGCUGC-CGAGC----------CCAGCAUG- -5'
27929 3' -52.6 NC_005886.2 + 36242 0.68 0.714692
Target:  5'- cGGCaucGGCGGCGGCaCGGG-CGgcgGCg -3'
miRNA:   3'- -CCGauaUUGCUGCCGaGCCCaGCa--UG- -5'
27929 3' -52.6 NC_005886.2 + 36359 0.68 0.714692
Target:  5'- cGGCaucGGCGGCGGCaCGGG-CGgcgGCa -3'
miRNA:   3'- -CCGauaUUGCUGCCGaGCCCaGCa--UG- -5'
27929 3' -52.6 NC_005886.2 + 37007 0.68 0.702617
Target:  5'- aGCUGauccGCGACGGUcucgaccuuggcaUCGGGgaaggCGUACg -3'
miRNA:   3'- cCGAUau--UGCUGCCG-------------AGCCCa----GCAUG- -5'
27929 3' -52.6 NC_005886.2 + 16807 1.13 0.000871
Target:  5'- cGGCUAUAACGACGGCUCGGGUCGUACg -3'
miRNA:   3'- -CCGAUAUUGCUGCCGAGCCCAGCAUG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.