miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27929	5'	-55.3	NC_005886.2	+	22573	0.66	0.666081
	Target:  5'- aCUGAGCGcgagcacacgcccGUCCGA--CUGCCGuGCGa- -3' miRNA:   3'- -GACUUGC-------------UAGGCUugGACGGC-CGCau -5'
27929	5'	-55.3	NC_005886.2	+	12627	0.66	0.65607
	Target:  5'- aUGGGCGGUCCGA-CCgauCCGcGCGa- -3' miRNA:   3'- gACUUGCUAGGCUuGGac-GGC-CGCau -5'
27929	5'	-55.3	NC_005886.2	+	34906	0.67	0.589226
	Target:  5'- aCUGcAACgGGUCCGAACCgcccgaaauUGCCGGUc-- -3' miRNA:   3'- -GAC-UUG-CUAGGCUUGG---------ACGGCCGcau -5'
27929	5'	-55.3	NC_005886.2	+	19567	0.68	0.513004
	Target:  5'- uUGAACG-UCCG-GCC-GCUGGCGUu -3' miRNA:   3'- gACUUGCuAGGCuUGGaCGGCCGCAu -5'
27929	5'	-55.3	NC_005886.2	+	41747	0.71	0.384321
	Target:  5'- -gGAACcAUUCGAgGCCUGCCGGCa-- -3' miRNA:   3'- gaCUUGcUAGGCU-UGGACGGCCGcau -5'
27929	5'	-55.3	NC_005886.2	+	2734	0.71	0.356927
	Target:  5'- --aAACGGUUCGAAUCUucgcgcgGCCGGCGUGu -3' miRNA:   3'- gacUUGCUAGGCUUGGA-------CGGCCGCAU- -5'
27929	5'	-55.3	NC_005886.2	+	40010	0.71	0.348388
	Target:  5'- aUGAACGAUUCGGuaggucgggccauGCUgaUGCCGGCGa- -3' miRNA:   3'- gACUUGCUAGGCU-------------UGG--ACGGCCGCau -5'
27929	5'	-55.3	NC_005886.2	+	16771	1.07	0.001194
	Target:  5'- cCUGAACGAUCCGAACCUGCCGGCGUAc -3' miRNA:   3'- -GACUUGCUAGGCUUGGACGGCCGCAU- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home