miRNA display CGI


Results 1 - 20 of 36 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2793 5' -58.3 NC_001491.2 + 93612 0.66 0.849607
Target:  5'- uGGUGGCgAgCUCcacGCUGGCCGUagcaaCCCa -3'
miRNA:   3'- -CCACUGgUgGAGa--UGACCGGUGg----GGG- -5'
2793 5' -58.3 NC_001491.2 + 138159 0.66 0.836964
Target:  5'- aGGUGcuuacGCuCGCCUCUcggcgccuccucgccGCuggaguUGGCgGCCCCCc -3'
miRNA:   3'- -CCAC-----UG-GUGGAGA---------------UG------ACCGgUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 109081 0.66 0.833731
Target:  5'- uGGUGGCCAgCCUC-AUU-GCUAgCCCUa -3'
miRNA:   3'- -CCACUGGU-GGAGaUGAcCGGUgGGGG- -5'
2793 5' -58.3 NC_001491.2 + 115939 0.66 0.833731
Target:  5'- aGGcGGCCGCCUCccc-GGCCcACCUCa -3'
miRNA:   3'- -CCaCUGGUGGAGaugaCCGG-UGGGGg -5'
2793 5' -58.3 NC_001491.2 + 126791 0.66 0.825526
Target:  5'- --cGACCGgUUCcgGCUGGCCAUCUUUg -3'
miRNA:   3'- ccaCUGGUgGAGa-UGACCGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 125518 0.66 0.817153
Target:  5'- cGGUccacGGCCGCCgCcGCgacGCCGCCCCg -3'
miRNA:   3'- -CCA----CUGGUGGaGaUGac-CGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 114989 0.66 0.80862
Target:  5'- aGU-ACCACaUCUACaugcgGGCCGCCCUg -3'
miRNA:   3'- cCAcUGGUGgAGAUGa----CCGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 41492 0.67 0.799933
Target:  5'- --gGACCGCgC-CUGCUGgaGCCACUCCa -3'
miRNA:   3'- ccaCUGGUG-GaGAUGAC--CGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 147268 0.67 0.794651
Target:  5'- aGGcGGCCgccugaggggagcggGCCuUCUGCggcugGGCUgcuGCCCCCg -3'
miRNA:   3'- -CCaCUGG---------------UGG-AGAUGa----CCGG---UGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 115253 0.67 0.791101
Target:  5'- aGGgggGACUcUCggcgCUGCUGGCgGCCCUg -3'
miRNA:   3'- -CCa--CUGGuGGa---GAUGACCGgUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 117874 0.67 0.791101
Target:  5'- aGGgGAUCGCCcggCcGCUggGGCCGCCaCCCc -3'
miRNA:   3'- -CCaCUGGUGGa--GaUGA--CCGGUGG-GGG- -5'
2793 5' -58.3 NC_001491.2 + 136948 0.67 0.79021
Target:  5'- ---cACCGCCUCUGC-GGCUGCCauugcugcagacaCCCa -3'
miRNA:   3'- ccacUGGUGGAGAUGaCCGGUGG-------------GGG- -5'
2793 5' -58.3 NC_001491.2 + 144216 0.67 0.785736
Target:  5'- --cGACCgcuaggucgaagcggGCCUCg---GaGCCACCCCCu -3'
miRNA:   3'- ccaCUGG---------------UGGAGaugaC-CGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 115490 0.67 0.773034
Target:  5'- -cUGGCCACCaUCgcggcccGCUGcaGCgGCCCCCc -3'
miRNA:   3'- ccACUGGUGG-AGa------UGAC--CGgUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 131570 0.67 0.763816
Target:  5'- cGGUGGCaCGCUUCUGCauacacGCCACCaCUg -3'
miRNA:   3'- -CCACUG-GUGGAGAUGac----CGGUGG-GGg -5'
2793 5' -58.3 NC_001491.2 + 82156 0.68 0.745053
Target:  5'- ---cGCCAUCUCUACgUGGaggCACCCCa -3'
miRNA:   3'- ccacUGGUGGAGAUG-ACCg--GUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 119345 0.68 0.735525
Target:  5'- --cGGCCAaucacaaUCgauaguguggGCUGGCCACUCCCa -3'
miRNA:   3'- ccaCUGGUgg-----AGa---------UGACCGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 145763 0.68 0.725912
Target:  5'- cGG-GGCCgauGCUgCUGCUGccGCCGCCCCg -3'
miRNA:   3'- -CCaCUGG---UGGaGAUGAC--CGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 116973 0.68 0.71622
Target:  5'- --cGGCCGCCUCgg-UGGCCaugaGCCgCCg -3'
miRNA:   3'- ccaCUGGUGGAGaugACCGG----UGGgGG- -5'
2793 5' -58.3 NC_001491.2 + 145353 0.68 0.706461
Target:  5'- gGGUGGCgGCCcCaGCggccgGGCgAUCCCCu -3'
miRNA:   3'- -CCACUGgUGGaGaUGa----CCGgUGGGGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.