miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
2793 5' -58.3 NC_001491.2 + 17622 0.7 0.616906
Target:  5'- aGGUGGCCcGCCaggcgCUGaaggauuaGGcCCACCCCCa -3'
miRNA:   3'- -CCACUGG-UGGa----GAUga------CC-GGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 23358 0.76 0.301795
Target:  5'- uGGUGcuuGCCGCCUUUggguacgGCgUGGCCGCUCCCc -3'
miRNA:   3'- -CCAC---UGGUGGAGA-------UG-ACCGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 29325 0.74 0.384874
Target:  5'- uGGUGAUUugC-CggugGGCCACCCCCu -3'
miRNA:   3'- -CCACUGGugGaGaugaCCGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 39180 0.72 0.508976
Target:  5'- cGGUGugCGCCUCagauagcagcGCUGcCCacGCCCCCa -3'
miRNA:   3'- -CCACugGUGGAGa---------UGACcGG--UGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 41492 0.67 0.799933
Target:  5'- --gGACCGCgC-CUGCUGgaGCCACUCCa -3'
miRNA:   3'- ccaCUGGUG-GaGAUGAC--CGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 43055 0.75 0.35326
Target:  5'- cGGaGGCUAUCUUUGC-GGCCGCCgCCCg -3'
miRNA:   3'- -CCaCUGGUGGAGAUGaCCGGUGG-GGG- -5'
2793 5' -58.3 NC_001491.2 + 57948 0.68 0.693684
Target:  5'- --cGGCCACC-CUGgcuCUGGCCGCuucagacauguuggCCCCu -3'
miRNA:   3'- ccaCUGGUGGaGAU---GACCGGUG--------------GGGG- -5'
2793 5' -58.3 NC_001491.2 + 82156 0.68 0.745053
Target:  5'- ---cGCCAUCUCUACgUGGaggCACCCCa -3'
miRNA:   3'- ccacUGGUGGAGAUG-ACCg--GUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 93612 0.66 0.849607
Target:  5'- uGGUGGCgAgCUCcacGCUGGCCGUagcaaCCCa -3'
miRNA:   3'- -CCACUGgUgGAGa--UGACCGGUGg----GGG- -5'
2793 5' -58.3 NC_001491.2 + 94664 0.71 0.54754
Target:  5'- uGUGACgCACCcacUCUuccaGGUCGCCCCCa -3'
miRNA:   3'- cCACUG-GUGG---AGAuga-CCGGUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 107092 0.73 0.434791
Target:  5'- -cUGACCACCUUacagaaaUGC-GGCCaccaGCCCCCa -3'
miRNA:   3'- ccACUGGUGGAG-------AUGaCCGG----UGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 109081 0.66 0.833731
Target:  5'- uGGUGGCCAgCCUC-AUU-GCUAgCCCUa -3'
miRNA:   3'- -CCACUGGU-GGAGaUGAcCGGUgGGGG- -5'
2793 5' -58.3 NC_001491.2 + 114989 0.66 0.80862
Target:  5'- aGU-ACCACaUCUACaugcgGGCCGCCCUg -3'
miRNA:   3'- cCAcUGGUGgAGAUGa----CCGGUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 115253 0.67 0.791101
Target:  5'- aGGgggGACUcUCggcgCUGCUGGCgGCCCUg -3'
miRNA:   3'- -CCa--CUGGuGGa---GAUGACCGgUGGGGg -5'
2793 5' -58.3 NC_001491.2 + 115490 0.67 0.773034
Target:  5'- -cUGGCCACCaUCgcggcccGCUGcaGCgGCCCCCc -3'
miRNA:   3'- ccACUGGUGG-AGa------UGAC--CGgUGGGGG- -5'
2793 5' -58.3 NC_001491.2 + 115720 0.73 0.418305
Target:  5'- gGGUGGCCACCcCg---GGCCACcaggcuCCCCg -3'
miRNA:   3'- -CCACUGGUGGaGaugaCCGGUG------GGGG- -5'
2793 5' -58.3 NC_001491.2 + 115939 0.66 0.833731
Target:  5'- aGGcGGCCGCCUCccc-GGCCcACCUCa -3'
miRNA:   3'- -CCaCUGGUGGAGaugaCCGG-UGGGGg -5'
2793 5' -58.3 NC_001491.2 + 116023 0.73 0.462475
Target:  5'- --cGACCGCCaccugCUGCcgGGCCACCCa- -3'
miRNA:   3'- ccaCUGGUGGa----GAUGa-CCGGUGGGgg -5'
2793 5' -58.3 NC_001491.2 + 116973 0.68 0.71622
Target:  5'- --cGGCCGCCUCgg-UGGCCaugaGCCgCCg -3'
miRNA:   3'- ccaCUGGUGGAGaugACCGG----UGGgGG- -5'
2793 5' -58.3 NC_001491.2 + 117874 0.67 0.791101
Target:  5'- aGGgGAUCGCCcggCcGCUggGGCCGCCaCCCc -3'
miRNA:   3'- -CCaCUGGUGGa--GaUGA--CCGGUGG-GGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.