Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
2793 | 5' | -58.3 | NC_001491.2 | + | 23358 | 0.76 | 0.301795 |
Target: 5'- uGGUGcuuGCCGCCUUUggguacgGCgUGGCCGCUCCCc -3' miRNA: 3'- -CCAC---UGGUGGAGA-------UG-ACCGGUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 144216 | 0.67 | 0.785736 |
Target: 5'- --cGACCgcuaggucgaagcggGCCUCg---GaGCCACCCCCu -3' miRNA: 3'- ccaCUGG---------------UGGAGaugaC-CGGUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 115490 | 0.67 | 0.773034 |
Target: 5'- -cUGGCCACCaUCgcggcccGCUGcaGCgGCCCCCc -3' miRNA: 3'- ccACUGGUGG-AGa------UGAC--CGgUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 131570 | 0.67 | 0.763816 |
Target: 5'- cGGUGGCaCGCUUCUGCauacacGCCACCaCUg -3' miRNA: 3'- -CCACUG-GUGGAGAUGac----CGGUGG-GGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 82156 | 0.68 | 0.745053 |
Target: 5'- ---cGCCAUCUCUACgUGGaggCACCCCa -3' miRNA: 3'- ccacUGGUGGAGAUG-ACCg--GUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 119345 | 0.68 | 0.735525 |
Target: 5'- --cGGCCAaucacaaUCgauaguguggGCUGGCCACUCCCa -3' miRNA: 3'- ccaCUGGUgg-----AGa---------UGACCGGUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 145763 | 0.68 | 0.725912 |
Target: 5'- cGG-GGCCgauGCUgCUGCUGccGCCGCCCCg -3' miRNA: 3'- -CCaCUGG---UGGaGAUGAC--CGGUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 116973 | 0.68 | 0.71622 |
Target: 5'- --cGGCCGCCUCgg-UGGCCaugaGCCgCCg -3' miRNA: 3'- ccaCUGGUGGAGaugACCGG----UGGgGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 145353 | 0.68 | 0.706461 |
Target: 5'- gGGUGGCgGCCcCaGCggccgGGCgAUCCCCu -3' miRNA: 3'- -CCACUGgUGGaGaUGa----CCGgUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 136948 | 0.67 | 0.79021 |
Target: 5'- ---cACCGCCUCUGC-GGCUGCCauugcugcagacaCCCa -3' miRNA: 3'- ccacUGGUGGAGAUGaCCGGUGG-------------GGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 115253 | 0.67 | 0.791101 |
Target: 5'- aGGgggGACUcUCggcgCUGCUGGCgGCCCUg -3' miRNA: 3'- -CCa--CUGGuGGa---GAUGACCGgUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 117874 | 0.67 | 0.791101 |
Target: 5'- aGGgGAUCGCCcggCcGCUggGGCCGCCaCCCc -3' miRNA: 3'- -CCaCUGGUGGa--GaUGA--CCGGUGG-GGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 138159 | 0.66 | 0.836964 |
Target: 5'- aGGUGcuuacGCuCGCCUCUcggcgccuccucgccGCuggaguUGGCgGCCCCCc -3' miRNA: 3'- -CCAC-----UG-GUGGAGA---------------UG------ACCGgUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 109081 | 0.66 | 0.833731 |
Target: 5'- uGGUGGCCAgCCUC-AUU-GCUAgCCCUa -3' miRNA: 3'- -CCACUGGU-GGAGaUGAcCGGUgGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 115939 | 0.66 | 0.833731 |
Target: 5'- aGGcGGCCGCCUCccc-GGCCcACCUCa -3' miRNA: 3'- -CCaCUGGUGGAGaugaCCGG-UGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 126791 | 0.66 | 0.825526 |
Target: 5'- --cGACCGgUUCcgGCUGGCCAUCUUUg -3' miRNA: 3'- ccaCUGGUgGAGa-UGACCGGUGGGGG- -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 125518 | 0.66 | 0.817153 |
Target: 5'- cGGUccacGGCCGCCgCcGCgacGCCGCCCCg -3' miRNA: 3'- -CCA----CUGGUGGaGaUGac-CGGUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 114989 | 0.66 | 0.80862 |
Target: 5'- aGU-ACCACaUCUACaugcgGGCCGCCCUg -3' miRNA: 3'- cCAcUGGUGgAGAUGa----CCGGUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 41492 | 0.67 | 0.799933 |
Target: 5'- --gGACCGCgC-CUGCUGgaGCCACUCCa -3' miRNA: 3'- ccaCUGGUG-GaGAUGAC--CGGUGGGGg -5' |
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2793 | 5' | -58.3 | NC_001491.2 | + | 147268 | 0.67 | 0.794651 |
Target: 5'- aGGcGGCCgccugaggggagcggGCCuUCUGCggcugGGCUgcuGCCCCCg -3' miRNA: 3'- -CCaCUGG---------------UGG-AGAUGa----CCGG---UGGGGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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