miRNA display CGI

Results 1 - 7 of 7 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
27930	3'	-57.6	NC_005886.2	+	16677	0.66	0.603007
	Target:  5'- cGCAcCGUUCGGcacugcGACGuacgcCGGCAGGUucGGa -3' miRNA:   3'- -CGUaGCAAGCC------CUGCc----GCCGUCCA--CC- -5'
27930	3'	-57.6	NC_005886.2	+	36192	0.68	0.447386
	Target:  5'- gGCAUCGgcggCGGcacgggcggcaucGGCGGCGGCAcgGGcGGc -3' miRNA:   3'- -CGUAGCaa--GCC-------------CUGCCGCCGU--CCaCC- -5'
27930	3'	-57.6	NC_005886.2	+	6797	0.69	0.401692
	Target:  5'- uGCAUCaaaCGGG-CGGCGGaaCAGGUGc -3' miRNA:   3'- -CGUAGcaaGCCCuGCCGCC--GUCCACc -5'
27930	3'	-57.6	NC_005886.2	+	36243	0.71	0.303138
	Target:  5'- gGCAUCGgcggCGgcacGGGCGGCGGCGGcGgcacGGg -3' miRNA:   3'- -CGUAGCaa--GC----CCUGCCGCCGUC-Ca---CC- -5'
27930	3'	-57.6	NC_005886.2	+	36312	0.72	0.261292
	Target:  5'- gGCAUCGgcggcaUCGGcGGCacgGGCGGCAcgggcGGUGGu -3' miRNA:   3'- -CGUAGCa-----AGCC-CUG---CCGCCGU-----CCACC- -5'
27930	3'	-57.6	NC_005886.2	+	36360	0.75	0.16353
	Target:  5'- gGCAUCGgcggCGgcacGGGCGGCGGCAGGc-- -3' miRNA:   3'- -CGUAGCaa--GC----CCUGCCGCCGUCCacc -5'
27930	3'	-57.6	NC_005886.2	+	17727	1.11	0.000399
	Target:  5'- cGCAUCGUUCGGGACGGCGGCAGGUGGc -3' miRNA:   3'- -CGUAGCAAGCCCUGCCGCCGUCCACC- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home