miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27931 3' -57.8 NC_005886.2 + 33139 0.66 0.529506
Target:  5'- cAUGGCAUggGCCGGUCgaugacGCAgaacucaucgaguugAUCCGUu -3'
miRNA:   3'- -UGCCGUAagCGGCCAGa-----CGU---------------UGGGCA- -5'
27931 3' -57.8 NC_005886.2 + 32289 0.66 0.514763
Target:  5'- gACGGaaugCGCUGGaacgCUGCGacGCCCGa -3'
miRNA:   3'- -UGCCguaaGCGGCCa---GACGU--UGGGCa -5'
27931 3' -57.8 NC_005886.2 + 17766 0.66 0.514763
Target:  5'- -gGGCGUgcUUGCCGGcauUCUcGCgAACCCGa -3'
miRNA:   3'- ugCCGUA--AGCGGCC---AGA-CG-UUGGGCa -5'
27931 3' -57.8 NC_005886.2 + 26912 0.66 0.494
Target:  5'- cCGcGCAaggUUGCCGGUCgcguagUGCcGCCCGg -3'
miRNA:   3'- uGC-CGUa--AGCGGCCAG------ACGuUGGGCa -5'
27931 3' -57.8 NC_005886.2 + 44595 0.66 0.494
Target:  5'- aACGGUAUcugCGCCGGUCaucgcaagUGCAAUCa-- -3'
miRNA:   3'- -UGCCGUAa--GCGGCCAG--------ACGUUGGgca -5'
27931 3' -57.8 NC_005886.2 + 45560 0.66 0.491944
Target:  5'- cGCGGCAUcguuaUCGCCGGccuucuuugccgCUGCGGCUuUGUg -3'
miRNA:   3'- -UGCCGUA-----AGCGGCCa-----------GACGUUGG-GCA- -5'
27931 3' -57.8 NC_005886.2 + 13111 0.68 0.424656
Target:  5'- cGCaGCA-UCGCCGGUUguaAGCCCGg -3'
miRNA:   3'- -UGcCGUaAGCGGCCAGacgUUGGGCa -5'
27931 3' -57.8 NC_005886.2 + 3372 0.68 0.415228
Target:  5'- cCGGCAaucgUGCCGGUucCUGCAccGCCUGc -3'
miRNA:   3'- uGCCGUaa--GCGGCCA--GACGU--UGGGCa -5'
27931 3' -57.8 NC_005886.2 + 46469 0.7 0.297631
Target:  5'- aACGGUcaUCGCauuGGUCUGCcGCUCGUu -3'
miRNA:   3'- -UGCCGuaAGCGg--CCAGACGuUGGGCA- -5'
27931 3' -57.8 NC_005886.2 + 41571 0.72 0.22464
Target:  5'- uCGGCGUcagCGCCGGacgUUGCGGCCgGUg -3'
miRNA:   3'- uGCCGUAa--GCGGCCa--GACGUUGGgCA- -5'
27931 3' -57.8 NC_005886.2 + 18308 1.07 0.000613
Target:  5'- cACGGCAUUCGCCGGUCUGCAACCCGUg -3'
miRNA:   3'- -UGCCGUAAGCGGCCAGACGUUGGGCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.