miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
27932 5' -53.1 NC_005886.2 + 29498 0.66 0.777324
Target:  5'- cAACgACGgUAgGCGCAGCGU-UGACGg -3'
miRNA:   3'- -UUG-UGCaAUgCGCGUCGCAgACUGUg -5'
27932 5' -53.1 NC_005886.2 + 37372 0.66 0.76684
Target:  5'- cGACGCGUg--GCGCGGCGcaauacuucgUCgucGGCACg -3'
miRNA:   3'- -UUGUGCAaugCGCGUCGC----------AGa--CUGUG- -5'
27932 5' -53.1 NC_005886.2 + 32989 0.66 0.765783
Target:  5'- cGCGCGUUGCGCGgGaagaccuGCGaagaUGGCACc -3'
miRNA:   3'- uUGUGCAAUGCGCgU-------CGCag--ACUGUG- -5'
27932 5' -53.1 NC_005886.2 + 24767 0.66 0.756205
Target:  5'- -cCGCGUUGCGCGCGGaCG-CggGGCu- -3'
miRNA:   3'- uuGUGCAAUGCGCGUC-GCaGa-CUGug -5'
27932 5' -53.1 NC_005886.2 + 10113 0.66 0.734537
Target:  5'- uGAUACGgUGCGCGCAGUaguucGUUUGAUu- -3'
miRNA:   3'- -UUGUGCaAUGCGCGUCG-----CAGACUGug -5'
27932 5' -53.1 NC_005886.2 + 6470 0.67 0.72353
Target:  5'- cAGCGCGUUGCGCucGCAuCGcagUGACGCa -3'
miRNA:   3'- -UUGUGCAAUGCG--CGUcGCag-ACUGUG- -5'
27932 5' -53.1 NC_005886.2 + 42918 0.67 0.678646
Target:  5'- cGCACGUUcgAUGCGCAacaauuccGUGUC-GGCGCg -3'
miRNA:   3'- uUGUGCAA--UGCGCGU--------CGCAGaCUGUG- -5'
27932 5' -53.1 NC_005886.2 + 42744 0.67 0.678646
Target:  5'- cAACACGgUAUGCGCuGCGUugCUGAgaACg -3'
miRNA:   3'- -UUGUGCaAUGCGCGuCGCA--GACUg-UG- -5'
27932 5' -53.1 NC_005886.2 + 31938 0.67 0.667274
Target:  5'- cGCGCGUUGCgauccggugcgaGCGCAGCacccGUCUGAa-- -3'
miRNA:   3'- uUGUGCAAUG------------CGCGUCG----CAGACUgug -5'
27932 5' -53.1 NC_005886.2 + 43213 0.68 0.655867
Target:  5'- uACGCGcgGCGCGCucuuCGUC-GACGCg -3'
miRNA:   3'- uUGUGCaaUGCGCGuc--GCAGaCUGUG- -5'
27932 5' -53.1 NC_005886.2 + 16207 0.68 0.644436
Target:  5'- -cCGgGUUACGCGCcG-GUCUGACGg -3'
miRNA:   3'- uuGUgCAAUGCGCGuCgCAGACUGUg -5'
27932 5' -53.1 NC_005886.2 + 43772 0.68 0.621549
Target:  5'- --aGCGUUggGCGCGCAGCaGUC-GACGu -3'
miRNA:   3'- uugUGCAA--UGCGCGUCG-CAGaCUGUg -5'
27932 5' -53.1 NC_005886.2 + 41004 0.68 0.621549
Target:  5'- cACGCGgaGCGCGCAcCGUCaUGGCu- -3'
miRNA:   3'- uUGUGCaaUGCGCGUcGCAG-ACUGug -5'
27932 5' -53.1 NC_005886.2 + 41962 0.69 0.598702
Target:  5'- cGGCGCGg---GgGCGGCGUCcGGCGCa -3'
miRNA:   3'- -UUGUGCaaugCgCGUCGCAGaCUGUG- -5'
27932 5' -53.1 NC_005886.2 + 24530 0.69 0.598702
Target:  5'- uGACAUGg--UGCGCGGCGUCacuggccGGCGCg -3'
miRNA:   3'- -UUGUGCaauGCGCGUCGCAGa------CUGUG- -5'
27932 5' -53.1 NC_005886.2 + 32622 0.69 0.575978
Target:  5'- cGCGCGUgACGCGguGCGUgcaGCGCa -3'
miRNA:   3'- uUGUGCAaUGCGCguCGCAgacUGUG- -5'
27932 5' -53.1 NC_005886.2 + 5784 0.7 0.509276
Target:  5'- gGACAuuCGaUugGCccCGGCGUCUGACACu -3'
miRNA:   3'- -UUGU--GCaAugCGc-GUCGCAGACUGUG- -5'
27932 5' -53.1 NC_005886.2 + 36880 0.7 0.509276
Target:  5'- uAGCGCGUUgcugcgGCGCGCAG-GUCUuucggGAUACg -3'
miRNA:   3'- -UUGUGCAA------UGCGCGUCgCAGA-----CUGUG- -5'
27932 5' -53.1 NC_005886.2 + 32563 0.72 0.406393
Target:  5'- -cCGCGUcACGCGCGGCGguguucaCUGugACc -3'
miRNA:   3'- uuGUGCAaUGCGCGUCGCa------GACugUG- -5'
27932 5' -53.1 NC_005886.2 + 46620 0.73 0.369039
Target:  5'- -uCGCGggUugGuCGCAGCGUgUGGCGCu -3'
miRNA:   3'- uuGUGCa-AugC-GCGUCGCAgACUGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.